RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 AHRP35869 848 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 DNAJB13P59910 316 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 LAPTM5Q13571 262 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 CPSF6Q16630 551 aaKnown RBP eCLIP12.58□□□□□ -0.4
GTF3A-209ENST00000640289 HIST2H2ACQ16777 129 aaPredicted RBP12.58□□□□□ -0.4
GTF3A-209ENST00000640289 LIPMQ5VYY2 423 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 LIPJQ5W064 366 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 HIST2H2AA3Q6FI13 130 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 C6orf15Q6UXA7 325 aaPredicted RBP12.58□□□□□ -0.4
GTF3A-209ENST00000640289 MILR1Q7Z6M3 343 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 NLGN4XQ8N0W4 816 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 ARHGEF39Q8N4T4 335 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 METTL27Q8N6F8 245 aaPredicted RBP12.58□□□□□ -0.4
GTF3A-209ENST00000640289 ANKRD42Q8N9B4 389 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 L3MBTL4Q8NA19 623 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 CAMKVQ8NCB2 501 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 NLGN4YQ8NFZ3 816 aaPredicted RBP12.58□□□□□ -0.4
GTF3A-209ENST00000640289 OR4F6Q8NGB9 312 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 SNIP1Q8TAD8 396 aaKnown RBP12.58□□□□□ -0.4
GTF3A-209ENST00000640289 ZCCHC10Q8TBK6 192 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 CREB3L4Q8TEY5 395 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 ZCCHC14Q8WYQ9 949 aaKnown RBP12.58□□□□□ -0.4
GTF3A-209ENST00000640289 CCT6BQ92526 530 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 ATP6V1G3Q96LB4 118 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 NDC1Q9BTX1 674 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 NTMT1Q9BV86 223 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 GATA5Q9BWX5 397 aaPredicted RBP12.58□□□□□ -0.4
GTF3A-209ENST00000640289 NT5DC2Q9H857 520 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 WDR70Q9NW82 654 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 NDOR1Q9UHB4 597 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 SRPK3Q9UPE1 567 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 KNTC1P50748 2209 aa12.58□□□□□ -0.4
GTF3A-209ENST00000640289 TMEM120BA0PK00 339 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 WDR91A4D1P6 747 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 MEN1O00255 615 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 TM9SF1O15321 606 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 TRIM13O60858 407 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 OR4F21O95013 312 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 CLDN9O95484 217 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 TBX6O95947 436 aaPredicted RBP12.57□□□□□ -0.4
GTF3A-209ENST00000640289 BPGMP07738 259 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 HBQ1P09105 142 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 SLC35G6P0C7Q6 338 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 ITGAXP20702 1163 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 HNF4AP41235 474 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 SERPINB4P48594 390 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 ARSFP54793 590 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 HYAL2Q12891 473 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 SRSF6Q13247 344 aaKnown RBP12.57□□□□□ -0.4
GTF3A-209ENST00000640289 CLN3Q13286 438 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 SLC9A5Q14940 896 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 PAGE2BQ5JRK9 111 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 ZNF385CQ66K41 422 aaPredicted RBP12.57□□□□□ -0.4
GTF3A-209ENST00000640289 LETMD1Q6P1Q0 360 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 MED27Q6P2C8 311 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 ZCCHC23Q6ZST2 131 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 SYVN1Q86TM6 617 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 LAS2Q8IYD9 372 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 CACNA2D3Q8IZS8 1091 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 DSELQ8IZU8 1212 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 RNF175Q8N4F7 328 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 ZNF248Q8NDW4 579 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 TRPV3Q8NET8 790 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 NT5CQ8TCD5 201 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.57□□□□□ -0.4
GTF3A-209ENST00000640289 KCNE4Q8WWG9 221 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 NKD1Q969G9 470 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 LRFN5Q96NI6 719 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 DCBLD2Q96PD2 775 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 GBP5Q96PP8 586 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 NLNQ9BYT8 704 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 PITHD1Q9GZP4 211 aaPredicted RBP12.57□□□□□ -0.4
GTF3A-209ENST00000640289 AICDAQ9GZX7 198 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 LHX9Q9NQ69 397 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 TXLNGQ9NUQ3 528 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 RAXQ9Y2V3 346 aa12.57□□□□□ -0.4
GTF3A-209ENST00000640289 LOC101059948A0A1B0GTJ6 334 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 A0A1B0GX78 115 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 ANKDD1BA6NHY2 528 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 C4orf51C9J302 202 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 TXNDC9O14530 226 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 UBFD1O14562 309 aaKnown RBP12.56□□□□□ -0.4
GTF3A-209ENST00000640289 FFAR3O14843 346 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 DSCR3O14972 297 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 GPR42O15529 346 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 FOXS1O43638 330 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 UGDHO60701 494 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 SH3BGRLO75368 114 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 ZWINTO95229 277 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 B3GALT4O96024 378 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 OTCP00480 354 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 DHRS4L1P0CG22 281 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 EIF2S3P41091 472 aaKnown RBP12.56□□□□□ -0.4
GTF3A-209ENST00000640289 ATP1A2P50993 1020 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 RGS1Q08116 209 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 LCP2Q13094 533 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 PWP1Q13610 501 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 DDX39BQ13838 428 aaKnown RBP12.56□□□□□ -0.4
GTF3A-209ENST00000640289 MAP7Q14244 749 aa12.56□□□□□ -0.4
GTF3A-209ENST00000640289 ZRSR2Q15696 482 aaKnown RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms