RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 PAPD4Q6PIY7 484 aaKnown RBP18.27■□□□□ 0.52
CLN3-262ENST00000637699 CENPUQ71F23 418 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 CDH24Q86UP0 819 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 SIAH3Q8IW03 269 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 SLC5A8Q8N695 610 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 PRELID2Q8N945 189 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 FAM98AQ8NCA5 519 aaKnown RBP18.27■□□□□ 0.52
CLN3-262ENST00000637699 FBXO15Q8NCQ5 510 aaPredicted RBP18.27■□□□□ 0.52
CLN3-262ENST00000637699 GIMAP7Q8NHV1 300 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 ASB11Q8WXH4 323 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 C14orf79Q96F83 325 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 SPOCK3Q9BQ16 436 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 TRIM51Q9BSJ1 452 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 RBCK1Q9BYM8 510 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 TMEM184CQ9NVA4 438 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 SOX13Q9UN79 622 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 ZBTB14O43829 449 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 RDH16O75452 317 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 CDC123O75794 336 aaPredicted RBP18.26■□□□□ 0.51
CLN3-262ENST00000637699 IMPA1P29218 277 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 TERF1P54274 439 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 ABRAXAS2Q15018 415 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 NSDHLQ15738 373 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 MAPKAPK3Q16644 382 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 SLC25A25Q6KCM7 469 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 TMEM214Q6NUQ4 689 aaKnown RBP18.26■□□□□ 0.51
CLN3-262ENST00000637699 NEPROQ6NW34 567 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 MEX3BQ6ZN04 569 aaKnown RBP18.26■□□□□ 0.51
CLN3-262ENST00000637699 GSTA5Q7RTV2 222 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 DOLPP1Q86YN1 238 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 CILP2Q8IUL8 1156 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 GHDCQ8N2G8 530 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 TXLNBQ8N3L3 684 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 HORMAD2Q8N7B1 307 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 CCDC138Q96M89 665 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 CDCP1Q9H5V8 836 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 ANKHQ9HCJ1 492 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 IGSF5Q9NSI5 407 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 LRFN1Q9P244 771 aa18.26■□□□□ 0.51
CLN3-262ENST00000637699 KCNE1BA0A087WTH5 132 aa18.25■□□□□ 0.51
CLN3-262ENST00000637699 TCRBV7S3A2A0A539 114 aa18.25■□□□□ 0.51
CLN3-262ENST00000637699 FEZF1A0PJY2 475 aa18.25■□□□□ 0.51
CLN3-262ENST00000637699 GFYI3L273 518 aa18.25■□□□□ 0.51
CLN3-262ENST00000637699 NEURL1O76050 574 aa18.25■□□□□ 0.51
CLN3-262ENST00000637699 CSNK1G2P78368 415 aa18.25■□□□□ 0.51
CLN3-262ENST00000637699 CCNG2Q16589 344 aa18.25■□□□□ 0.51
CLN3-262ENST00000637699 KIAA0930Q6ICG6 404 aaPredicted RBP18.25■□□□□ 0.51
CLN3-262ENST00000637699 C4orf22Q6V702 233 aa18.25■□□□□ 0.51
CLN3-262ENST00000637699 PDSS2Q86YH6 399 aa18.25■□□□□ 0.51
CLN3-262ENST00000637699 KCT2Q8NC54 265 aa18.25■□□□□ 0.51
CLN3-262ENST00000637699 CA5BP1Q8WTZ4 195 aa18.25■□□□□ 0.51
CLN3-262ENST00000637699 SDCCAG3Q96C92 435 aa18.25■□□□□ 0.51
CLN3-262ENST00000637699 PEX11GQ96HA9 241 aa18.25■□□□□ 0.51
CLN3-262ENST00000637699 LPAR4Q99677 370 aa18.25■□□□□ 0.51
CLN3-262ENST00000637699 MCCC2Q9HCC0 563 aa18.25■□□□□ 0.51
CLN3-262ENST00000637699 CCDC177Q9NQR7 707 aaPredicted RBP18.25■□□□□ 0.51
CLN3-262ENST00000637699 CTAGE9A4FU28 777 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 ZNF860A6NHJ4 632 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 PRRG2O14669 202 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 NDC80O14777 642 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 KIF5CO60282 957 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 AVILO75366 819 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 TSPAN12O95859 305 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 MPC1LP0DKB6 136 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 PAMP19021 973 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 HRH2P25021 359 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 COILP38432 576 aaPredicted RBP18.24■□□□□ 0.51
CLN3-262ENST00000637699 SKIV2L2P42285 1042 aaKnown RBP18.24■□□□□ 0.51
CLN3-262ENST00000637699 TAS2R50P59544 299 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 RHAGQ02094 409 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 USP10Q14694 798 aaKnown RBP18.24■□□□□ 0.51
CLN3-262ENST00000637699 SIX1Q15475 284 aaPredicted RBP18.24■□□□□ 0.51
CLN3-262ENST00000637699 RNFT1Q5M7Z0 435 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 ZNF468Q5VIY5 522 aaPredicted RBP18.24■□□□□ 0.51
CLN3-262ENST00000637699 CASC4Q6P4E1 433 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 SPNS3Q6ZMD2 512 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 CYHR1Q6ZMK1 362 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 UBE2R2Q712K3 238 aaPredicted RBP18.24■□□□□ 0.51
CLN3-262ENST00000637699 CHERPQ8IWX8 916 aaKnown RBP18.24■□□□□ 0.51
CLN3-262ENST00000637699 CAMKVQ8NCB2 501 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 PLPP5Q8NEB5 264 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 TSLPQ969D9 159 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 TSGA10Q9BZW7 698 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 ENKD1Q9H0I2 346 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 INTS10Q9NVR2 710 aaKnown RBP18.24■□□□□ 0.51
CLN3-262ENST00000637699 PPT2Q9UMR5 302 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 SH2B3Q9UQQ2 575 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 VPS9D1Q9Y2B5 631 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 MED16Q9Y2X0 877 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 NAALAD2Q9Y3Q0 740 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 NEU2Q9Y3R4 380 aa18.24■□□□□ 0.51
CLN3-262ENST00000637699 ITPR3Q14573 2671 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 E9PLN8 166 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 ADAM10O14672 748 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 LCMT2O60294 686 aaKnown RBP18.23■□□□□ 0.51
CLN3-262ENST00000637699 ZNF24P17028 368 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 KCNJ1P48048 391 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 OR4D2P58180 307 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 SLC26A5P58743 744 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 TBPL1P62380 186 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms