RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 PLIN5Q00G26 463 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 MS4A2Q01362 244 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 PWP1Q13610 501 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 MAPKAPK3Q16644 382 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 UGT8Q16880 541 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 KHDRBS2Q5VWX1 349 aaKnown RBP16.15■□□□□ 0.18
CLN3-252ENST00000636907 KIAA2013Q8IYS2 634 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 FLVCR1-AS1Q8TAF5 88 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 GTF2H4Q92759 462 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 SORBS1Q9BX66 1292 aaKnown RBP16.15■□□□□ 0.18
CLN3-252ENST00000636907 RNPEPL1Q9HAU8 725 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 GMPR2Q9P2T1 348 aaKnown RBP16.15■□□□□ 0.18
CLN3-252ENST00000636907 NKX1-2Q9UD57 310 aaPredicted RBP16.15■□□□□ 0.18
CLN3-252ENST00000636907 PCDHA9Q9Y5H5 950 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 TDRD6O60522 2096 aaKnown RBP16.15■□□□□ 0.18
CLN3-252ENST00000636907 HEATR5BQ9P2D3 2071 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 GON4LQ3T8J9 2241 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 B4DGG1 531 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 KLHL18O94889 574 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 GBAP04062 536 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 POLR2CP19387 275 aaPredicted RBP16.14■□□□□ 0.18
CLN3-252ENST00000636907 HOXA6P31267 233 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 GRK3P35626 688 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 ASMTP46597 345 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 CSNK1EP49674 416 aaKnown RBP16.14■□□□□ 0.18
CLN3-252ENST00000636907 KIR2DS3Q14952 304 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 ELOCQ15369 112 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 HKDC1Q2TB90 917 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 PGS1Q32NB8 556 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 RABL3Q5HYI8 236 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 DEPDC1Q5TB30 811 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 ZNF425Q6IV72 752 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 SLC9B2Q86UD5 537 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 OR7A2PQ8NGA2 310 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 OR10G6Q8NH81 332 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 LMX1AQ8TE12 382 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 STMN2Q93045 179 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 TMEM125Q96AQ2 219 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 SLC22A18Q96BI1 424 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 F2RL3Q96RI0 385 aa16.14■□□□□ 0.18
CLN3-252ENST00000636907 SUCOQ9UBS9 1254 aaKnown RBP16.14■□□□□ 0.18
CLN3-252ENST00000636907 OR6C74A6NCV1 312 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 CLEC3AO75596 197 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 SEMA3DO95025 777 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 KCNH1O95259 989 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 B3GALT4O96024 378 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 LMNAP02545 664 aaKnown RBP16.14■□□□□ 0.17
CLN3-252ENST00000636907 KLK1P06870 262 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 HRH2P25021 359 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 WDR45BQ5MNZ6 344 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 C6orf10Q5SRN2 563 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 NANOGP8Q6NSW7 305 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 ENDOVQ8N8Q3 282 aaKnown RBP16.14■□□□□ 0.17
CLN3-252ENST00000636907 HIPK4Q8NE63 616 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 CREB3L4Q8TEY5 395 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 PPM1MQ96MI6 270 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 OR2A14Q96R47 310 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 CGREF1Q99674 301 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 DCLRE1BQ9H816 532 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 NANOGQ9H9S0 305 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 MCM8Q9UJA3 840 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 SNX7Q9UNH6 387 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 NEUROG3Q9Y4Z2 214 aa16.14■□□□□ 0.17
CLN3-252ENST00000636907 SNRNP200O75643 2136 aaKnown RBP16.13■□□□□ 0.17
CLN3-252ENST00000636907 CCDC163A0A0D9SF12 145 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 PLPP1O14494 284 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 ACOT8O14734 319 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 SCAMP2O15127 329 aaKnown RBP16.13■□□□□ 0.17
CLN3-252ENST00000636907 VILLO15195 856 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 BCAT2O15382 392 aaPredicted RBP16.13■□□□□ 0.17
CLN3-252ENST00000636907 SERPIND1P05546 499 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 TDGF1P13385 188 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 COX7A2P14406 83 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 UGT2B7P16662 529 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 GRIA3P42263 894 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 KIR3DL1P43629 444 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 HHEXQ03014 270 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 ZNF763Q0D2J5 394 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 FLOT2Q14254 428 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 RCN1Q15293 331 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 CCDC6Q16204 474 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 DPY19L1Q2PZI1 675 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 OR4F3Q6IEY1 312 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 TMEM26Q6ZUK4 368 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 TRIM73Q86UV7 250 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 PAQR7Q86WK9 346 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 ZNF761Q86XN6 746 aaPredicted RBP16.13■□□□□ 0.17
CLN3-252ENST00000636907 GKN2Q86XP6 184 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 TTLQ8NG68 377 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.13■□□□□ 0.17
CLN3-252ENST00000636907 JADE3Q92613 823 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 EDAQ92838 391 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 SARGQ9BW04 601 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 ZNF717Q9BY31 904 aaPredicted RBP16.13■□□□□ 0.17
CLN3-252ENST00000636907 REXO4Q9GZR2 422 aaKnown RBP16.13■□□□□ 0.17
CLN3-252ENST00000636907 PCDHAC1Q9H158 963 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 SERHLQ9NQF3 203 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 PRMT8Q9NR22 394 aaPredicted RBP16.13■□□□□ 0.17
CLN3-252ENST00000636907 ACTR10Q9NZ32 417 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 AHSPQ9NZD4 102 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms