RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 TUBA3EQ6PEY2 450 aa15.23■□□□□ 0.03
CLN3-246ENST00000636228 AGTRAPQ6RW13 159 aa15.23■□□□□ 0.03
CLN3-246ENST00000636228 ZNF662Q6ZS27 426 aa15.23■□□□□ 0.03
CLN3-246ENST00000636228 ASPGQ86U10 573 aa15.23■□□□□ 0.03
CLN3-246ENST00000636228 CRLF3Q8IUI8 442 aa15.23■□□□□ 0.03
CLN3-246ENST00000636228 SLC13A3Q8WWT9 602 aa15.23■□□□□ 0.03
CLN3-246ENST00000636228 TSLPQ969D9 159 aa15.23■□□□□ 0.03
CLN3-246ENST00000636228 TM4SF19Q96DZ7 209 aa15.23■□□□□ 0.03
CLN3-246ENST00000636228 MOCOSQ96EN8 888 aa15.23■□□□□ 0.03
CLN3-246ENST00000636228 PEX11GQ96HA9 241 aa15.23■□□□□ 0.03
CLN3-246ENST00000636228 ZNF354BQ96LW1 612 aa15.23■□□□□ 0.03
CLN3-246ENST00000636228 TSPAN10Q9H1Z9 355 aaPredicted RBP15.23■□□□□ 0.03
CLN3-246ENST00000636228 SUCOQ9UBS9 1254 aaKnown RBP15.23■□□□□ 0.03
CLN3-246ENST00000636228 C19orf25Q9UFG5 118 aaPredicted RBP15.23■□□□□ 0.03
CLN3-246ENST00000636228 TRMT6Q9UJA5 497 aaKnown RBP15.23■□□□□ 0.03
CLN3-246ENST00000636228 CNTRLQ7Z7A1 2325 aa15.23■□□□□ 0.03
CLN3-246ENST00000636228 BANF1O75531 89 aa15.22■□□□□ 0.03
CLN3-246ENST00000636228 HRH2P25021 359 aa15.22■□□□□ 0.03
CLN3-246ENST00000636228 GABRB3P28472 473 aa15.22■□□□□ 0.03
CLN3-246ENST00000636228 CA7P43166 264 aa15.22■□□□□ 0.03
CLN3-246ENST00000636228 CDKN2DP55273 166 aa15.22■□□□□ 0.03
CLN3-246ENST00000636228 ACTN3Q08043 901 aaPredicted RBP15.22■□□□□ 0.03
CLN3-246ENST00000636228 C3AR1Q16581 482 aa15.22■□□□□ 0.03
CLN3-246ENST00000636228 PHKG1Q16816 387 aa15.22■□□□□ 0.03
CLN3-246ENST00000636228 ZXDCQ2QGD7 858 aaPredicted RBP15.22■□□□□ 0.03
CLN3-246ENST00000636228 SFT2D3Q587I9 215 aa15.22■□□□□ 0.03
CLN3-246ENST00000636228 RBM20Q5T481 1227 aaKnown RBP15.22■□□□□ 0.03
CLN3-246ENST00000636228 ARMC3Q5W041 872 aa15.22■□□□□ 0.03
CLN3-246ENST00000636228 CAPN13Q6MZZ7 669 aaPredicted RBP15.22■□□□□ 0.03
CLN3-246ENST00000636228 H3F3CQ6NXT2 135 aa15.22■□□□□ 0.03
CLN3-246ENST00000636228 CCDC137Q6PK04 289 aaKnown RBP15.22■□□□□ 0.03
CLN3-246ENST00000636228 PAQR3Q6TCH7 311 aa15.22■□□□□ 0.03
CLN3-246ENST00000636228 C17orf64Q86WR6 236 aa15.22■□□□□ 0.03
CLN3-246ENST00000636228 NAT8LQ8N9F0 302 aa15.22■□□□□ 0.03
CLN3-246ENST00000636228 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.22■□□□□ 0.03
CLN3-246ENST00000636228 CAMKVQ8NCB2 501 aa15.22■□□□□ 0.03
CLN3-246ENST00000636228 CALML6Q8TD86 181 aa15.22■□□□□ 0.03
CLN3-246ENST00000636228 PYCR2Q96C36 320 aa15.22■□□□□ 0.03
CLN3-246ENST00000636228 COMMD10Q9Y6G5 202 aa15.22■□□□□ 0.03
CLN3-246ENST00000636228 MYBL2P10244 700 aa15.21■□□□□ 0.03
CLN3-246ENST00000636228 NPPBP16860 134 aa15.21■□□□□ 0.03
CLN3-246ENST00000636228 HTR1EP28566 365 aa15.21■□□□□ 0.03
CLN3-246ENST00000636228 OLR1P78380 273 aa15.21■□□□□ 0.03
CLN3-246ENST00000636228 RHAGQ02094 409 aa15.21■□□□□ 0.03
CLN3-246ENST00000636228 ABRAXAS2Q15018 415 aa15.21■□□□□ 0.03
CLN3-246ENST00000636228 OR1C1Q15619 314 aa15.21■□□□□ 0.03
CLN3-246ENST00000636228 NSDHLQ15738 373 aa15.21■□□□□ 0.03
CLN3-246ENST00000636228 PAPD4Q6PIY7 484 aaKnown RBP15.21■□□□□ 0.03
CLN3-246ENST00000636228 LRRC8AQ8IWT6 810 aa15.21■□□□□ 0.03
CLN3-246ENST00000636228 LMNTD2Q8IXW0 634 aa15.21■□□□□ 0.03
CLN3-246ENST00000636228 RASGEF1CQ8N431 466 aa15.21■□□□□ 0.03
CLN3-246ENST00000636228 MFSD9Q8NBP5 474 aa15.21■□□□□ 0.03
CLN3-246ENST00000636228 C2CD4AQ8NCU7 369 aaPredicted RBP15.21■□□□□ 0.03
CLN3-246ENST00000636228 MDS2Q8NDY4 140 aa15.21■□□□□ 0.03
CLN3-246ENST00000636228 THAP11Q96EK4 314 aa15.21■□□□□ 0.03
CLN3-246ENST00000636228 UTP23Q9BRU9 249 aaKnown RBP15.21■□□□□ 0.03
CLN3-246ENST00000636228 PARVBQ9HBI1 364 aa15.21■□□□□ 0.03
CLN3-246ENST00000636228 SLC17A6Q9P2U8 582 aa15.21■□□□□ 0.03
CLN3-246ENST00000636228 TINAGQ9UJW2 476 aa15.21■□□□□ 0.03
CLN3-246ENST00000636228 NPIPA5E9PKD4 350 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 TTI1O43156 1089 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 OR1F1O43749 312 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 SLC19A2O60779 497 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 SERPIND1P05546 499 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 C8GP07360 202 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 AGTR2P50052 363 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 CCZ1BP86790 482 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 CCZ1P86791 482 aaPredicted RBP15.2■□□□□ 0.02
CLN3-246ENST00000636228 OC90Q02509 493 aaPredicted RBP15.2■□□□□ 0.02
CLN3-246ENST00000636228 RBPJQ06330 500 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 DHX9Q08211 1270 aaKnown RBP15.2■□□□□ 0.02
CLN3-246ENST00000636228 MEP1AQ16819 746 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 NCCRP1Q6ZVX7 275 aaPredicted RBP15.2■□□□□ 0.02
CLN3-246ENST00000636228 PALM2Q8IXS6 379 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 MYO1HQ8N1T3 1032 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 ZNF808Q8N4W9 903 aaPredicted RBP15.2■□□□□ 0.02
CLN3-246ENST00000636228 ZNF740Q8NDX6 193 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 M1APQ8TC57 530 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 LINGO1Q96FE5 620 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 FAM167BQ9BTA0 163 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 SGPP1Q9BX95 441 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 PCBD2Q9H0N5 130 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 CDCP1Q9H5V8 836 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 MMP25Q9NPA2 562 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 LANCL2Q9NS86 450 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 NPIPA1Q9UND3 350 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 PPP2R2CQ9Y2T4 447 aa15.2■□□□□ 0.02
CLN3-246ENST00000636228 KLF2Q9Y5W3 355 aaPredicted RBP15.2■□□□□ 0.02
CLN3-246ENST00000636228 DIDO1Q9BTC0 2240 aaKnown RBP15.2■□□□□ 0.02
CLN3-246ENST00000636228 SVILO95425 2214 aa15.19■□□□□ 0.02
CLN3-246ENST00000636228 GABRR3A8MPY1 467 aa15.19■□□□□ 0.02
CLN3-246ENST00000636228 EIF3FO00303 357 aaPredicted RBP15.19■□□□□ 0.02
CLN3-246ENST00000636228 NDUFS4O43181 175 aa15.19■□□□□ 0.02
CLN3-246ENST00000636228 AHSGP02765 367 aa15.19■□□□□ 0.02
CLN3-246ENST00000636228 POU3F2P20265 443 aaPredicted RBP15.19■□□□□ 0.02
CLN3-246ENST00000636228 GRK3P35626 688 aa15.19■□□□□ 0.02
CLN3-246ENST00000636228 RGS4P49798 205 aa15.19■□□□□ 0.02
CLN3-246ENST00000636228 OR4D2P58180 307 aa15.19■□□□□ 0.02
CLN3-246ENST00000636228 ADORA2A-AS1P86434 159 aa15.19■□□□□ 0.02
CLN3-246ENST00000636228 USP10Q14694 798 aaKnown RBP15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms