RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 OR4K3Q96R72 315 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 CLCC1Q96S66 551 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 GALPQ9UBC7 116 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 INTS6Q9UL03 887 aaKnown RBP8.65□□□□□ -1.02
VCL-206ENST00000623461 ASF1AQ9Y294 204 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 FLRT2O43155 660 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 CREBL2O60519 120 aaPredicted RBP8.65□□□□□ -1.02
VCL-206ENST00000623461 RCBTB2O95199 551 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 GADD45AP24522 165 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 SCNN1GP51170 649 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 NRLP54845 237 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 MS4A2Q01362 244 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 CBX2Q14781 532 aaPredicted RBP8.65□□□□□ -1.02
VCL-206ENST00000623461 COL28A1Q2UY09 1125 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 PROX2Q3B8N5 592 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 OR2L3Q8NG85 312 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 RHOXF1Q8NHV9 184 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 ZNF599Q96NL3 588 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 SNX18Q96RF0 628 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 ZNF382Q96SR6 550 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 FTHL17Q9BXU8 183 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 ZNF436Q9C0F3 470 aaPredicted RBP8.65□□□□□ -1.02
VCL-206ENST00000623461 ARL6Q9H0F7 186 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 RHBGQ9H310 441 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 MRC1P22897 1456 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 TCRBV3S1A0A5B6 114 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 MEIOCA2RUB1 952 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 GRK5P34947 590 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 CXCR4P61073 352 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 XKR4Q5GH76 650 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 SLC25A25Q6KCM7 469 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 SAMD14Q8IZD0 417 aaPredicted RBP8.65□□□□□ -1.02
VCL-206ENST00000623461 RHEBL1Q8TAI7 183 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 ABCG5Q9H222 651 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 METTL8Q9H825 291 aaKnown RBP8.65□□□□□ -1.02
VCL-206ENST00000623461 SIGLEC1Q9BZZ2 1709 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 CAPN5O15484 640 aaPredicted RBP8.65□□□□□ -1.02
VCL-206ENST00000623461 EEF1E1O43324 174 aaKnown RBP8.65□□□□□ -1.02
VCL-206ENST00000623461 RASGRP1O95267 797 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 MATN4O95460 622 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 UGT2B10P36537 528 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 FNTBP49356 437 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 CDK5R2Q13319 367 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 PON3Q15166 354 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 SF3A2Q15428 464 aaKnown RBP8.65□□□□□ -1.02
VCL-206ENST00000623461 GRIK5Q16478 980 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 RAET1GQ6H3X3 334 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 TAC4Q86UU9 113 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 FBXO27Q8NI29 283 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 ESAMQ96AP7 390 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 COQ10AQ96MF6 247 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 KXD1Q9BQD3 176 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 DHRS4Q9BTZ2 278 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 RGCCQ9H4X1 137 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 PDZD7Q9H5P4 517 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 NUFIP1Q9UHK0 495 aaKnown RBP8.65□□□□□ -1.02
VCL-206ENST00000623461 FKBPLQ9UIM3 349 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 PSAT1Q9Y617 370 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 CNTNAP1P78357 1384 aa8.65□□□□□ -1.02
VCL-206ENST00000623461 IGKV6D-41A0A0C4DH26 115 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 CXCL11O14625 94 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 LYRM1O43325 122 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 CRYBB1P53674 252 aaPredicted RBP8.65□□□□□ -1.03
VCL-206ENST00000623461 AP1S1P61966 158 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 TUSC3Q13454 348 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 EIF2S3LQ2VIR3 472 aaKnown RBP8.65□□□□□ -1.03
VCL-206ENST00000623461 SPANXN4Q5MJ08 99 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 GID4Q8IVV7 300 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 SAMD12Q8N8I0 201 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 LMO3Q8TAP4 145 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 NDRG1Q92597 394 aaKnown RBP8.65□□□□□ -1.03
VCL-206ENST00000623461 CHFRQ96EP1 664 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 NELL2Q99435 816 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 UQCC2Q9BRT2 126 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 TPT1P8Q9HAU6 139 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 DNAJC27Q9NZQ0 273 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 PLEKHA6Q9Y2H5 1048 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 NUBP2Q9Y5Y2 271 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 TRAPPC13A5PLN9 417 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 HOXD13P35453 343 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 CDKN2CP42773 168 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 HMGCS1Q01581 520 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 KCNC4Q03721 635 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 PQLC3Q8N755 202 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 ATP6V1C2Q8NEY4 427 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 OR8K5Q8NH50 307 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 RERGQ96A58 199 aaPredicted RBP8.65□□□□□ -1.03
VCL-206ENST00000623461 PCBD2Q9H0N5 130 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 FBRSL1Q9HCM7 1045 aaKnown RBP8.65□□□□□ -1.03
VCL-206ENST00000623461 ERVW-1Q9UQF0 538 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 HES2Q9Y543 173 aa8.65□□□□□ -1.03
VCL-206ENST00000623461 CCL22O00626 93 aa8.64□□□□□ -1.03
VCL-206ENST00000623461 TPST2O60704 377 aa8.64□□□□□ -1.03
VCL-206ENST00000623461 AGR2O95994 175 aa8.64□□□□□ -1.03
VCL-206ENST00000623461 C1RP00736 705 aa8.64□□□□□ -1.03
VCL-206ENST00000623461 STSP08842 583 aa8.64□□□□□ -1.03
VCL-206ENST00000623461 PKLRP30613 574 aa8.64□□□□□ -1.03
VCL-206ENST00000623461 GJA9P57773 515 aa8.64□□□□□ -1.03
VCL-206ENST00000623461 SLC3A1Q07837 685 aa8.64□□□□□ -1.03
VCL-206ENST00000623461 HSPB3Q12988 150 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms