RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TCEA1P23193 301 aaKnown RBP13.57□□□□□ -0.24
CPSF1-212ENST00000616140 TUBA1BP68363 451 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 SH3BP2P78314 561 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 PIGFQ07326 219 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 DNASE1L3Q13609 305 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 ENPP7Q6UWV6 458 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 TUBA1AQ71U36 451 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 SERINC5Q86VE9 423 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 RNF130Q86XS8 419 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 ZNF420Q8TAQ5 688 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-212ENST00000616140 SLC5A11Q8WWX8 675 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 SLC22A18Q96BI1 424 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 RDH12Q96NR8 316 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 MOV10Q9HCE1 1003 aaKnown RBP13.57□□□□□ -0.24
CPSF1-212ENST00000616140 PHF24Q9UPV7 400 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 KCNK6Q9Y257 313 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 ARFGEF2Q9Y6D5 1785 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 MYH3P11055 1940 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 FAM170BA6NMN3 283 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 TSPAN9O75954 239 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 DHRS4L1P0CG22 281 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 HTR1EP28566 365 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 BLOC1S3Q6QNY0 202 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 RANBP10Q6VN20 620 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 OR8J3Q8NGG0 315 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 HDAC2Q92769 488 aaKnown RBP13.57□□□□□ -0.24
CPSF1-212ENST00000616140 SLC38A3Q99624 504 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 MED31Q9Y3C7 131 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 RWDD3Q9Y3V2 267 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 ZNF879B4DU55 563 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 KDELR2P33947 212 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 RFC2P35250 354 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 DNASE1L1P49184 302 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 TMEM115Q12893 351 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-212ENST00000616140 RAB39AQ14964 217 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 CYP27C1Q4G0S4 372 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 PGBD2Q6P3X8 592 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 MINDY1Q8N5J2 469 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 ARFGAP1Q8N6T3 406 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 CNIH3Q8TBE1 160 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 CNDP2Q96KP4 475 aaKnown RBP13.57□□□□□ -0.24
CPSF1-212ENST00000616140 C11orf84Q9BUA3 381 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-212ENST00000616140 ABCG4Q9H172 646 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 PAK6Q9NQU5 681 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-212ENST00000616140 STOML2Q9UJZ1 356 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 NRXN3Q9Y4C0 1643 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 AURKAO14965 403 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 MID1O15344 667 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 C8orf89P0DMQ9 161 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 ADH5P11766 374 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 STK19P49842 368 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-212ENST00000616140 CBLBQ13191 982 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 WSCD2Q2TBF2 565 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 PRPF38BQ5VTL8 546 aaKnown RBP13.56□□□□□ -0.24
CPSF1-212ENST00000616140 RASSF6Q6ZTQ3 369 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 LINGO2Q7L985 606 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 ISCA2Q86U28 154 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 FBXO15Q8NCQ5 510 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-212ENST00000616140 METTL21AQ8WXB1 218 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 KCNH6Q9H252 994 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 EXO5Q9H790 373 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 MKKSQ9NPJ1 570 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-212ENST00000616140 TBC1D24Q9ULP9 559 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 ZNF451Q9Y4E5 1061 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 ST14Q9Y5Y6 855 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 SOCS5O75159 536 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 SEMA3DO95025 777 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 CDRT1O95170 752 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 DBIP07108 87 aaKnown RBP13.56□□□□□ -0.24
CPSF1-212ENST00000616140 HNF1BP35680 557 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 CDH11P55287 796 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 VMACQ2NL98 169 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 REEP3Q6NUK4 255 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 DPY19L3Q6ZPD9 716 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 MINDY2Q8NBR6 621 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 C1orf216Q8TAB5 229 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 ARNTL2Q8WYA1 636 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 TSSK6Q9BXA6 273 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 NDRG2Q9UN36 371 aaKnown RBP13.56□□□□□ -0.24
CPSF1-212ENST00000616140 COL14A1Q05707 1796 aaKnown RBP13.56□□□□□ -0.24
CPSF1-212ENST00000616140 GLOD5A6NK44 160 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 H0YAE9 185 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 FOXD2O60548 495 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-212ENST00000616140 TFPTP0C1Z6 253 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 HLA-EP13747 358 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 CLCN7P51798 805 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 GRHL3Q8TE85 626 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 NKD1Q969G9 470 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 HERC2P3Q9BVR0 1158 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 COMMD4Q9H0A8 199 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 SMOXQ9NWM0 555 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 TMEM98Q9Y2Y6 226 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 GPR32O75388 356 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 MASP1P48740 699 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 ADAM8P78325 824 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 KCNC4Q03721 635 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 ABRAXAS2Q15018 415 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 PIGGQ5H8A4 983 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 TCEAL5Q5H9L2 206 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 TOR1AIP1Q5JTV8 583 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms