RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 DMXL1Q9Y485 3027 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 LOC105369274A0A096LPK9 316 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 LOC102723532A0A0G2JNH3 316 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 EFCAB7A8K855 629 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 EIF2S1P05198 315 aaKnown RBP14.05□□□□□ -0.16
CD48-203ENST00000613788 SERPIND1P05546 499 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 SLC35G6P0C7Q6 338 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 NEK2P51955 445 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 CLDN6P56747 220 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 VSX2P58304 361 aaPredicted RBP14.05□□□□□ -0.16
CD48-203ENST00000613788 FOXM1Q08050 763 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 RGS1Q08116 209 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 TUBB3Q13509 450 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 DDX39BQ13838 428 aaKnown RBP14.05□□□□□ -0.16
CD48-203ENST00000613788 PUM1Q14671 1186 aaKnown RBP eCLIP14.05□□□□□ -0.16
CD48-203ENST00000613788 GPR19Q15760 415 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 DEFB110Q30KQ9 67 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 UGT3A2Q3SY77 523 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 WDR75Q8IWA0 830 aaKnown RBP14.05□□□□□ -0.16
CD48-203ENST00000613788 GPR135Q8IZ08 494 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 OR4N4Q8N0Y3 316 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 GBP7Q8N8V2 638 aaPredicted RBP14.05□□□□□ -0.16
CD48-203ENST00000613788 OR8K5Q8NH50 307 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 ZNF473Q8WTR7 871 aaKnown RBP14.05□□□□□ -0.16
CD48-203ENST00000613788 USP7Q93009 1102 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 TM4SF19Q96DZ7 209 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 CMTM7Q96FZ5 175 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 PRR11Q96HE9 360 aaPredicted RBP14.05□□□□□ -0.16
CD48-203ENST00000613788 OR6C1Q96RD1 312 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 MTERF1Q99551 399 aaKnown RBP14.05□□□□□ -0.16
CD48-203ENST00000613788 BRF2Q9HAW0 419 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 NMRK1Q9NWW6 199 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 IRAK4Q9NWZ3 460 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 VTI1BQ9UEU0 232 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 PPT2Q9UMR5 302 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 DNAJC15Q9Y5T4 150 aa14.05□□□□□ -0.16
CD48-203ENST00000613788 CCDC187A0A096LP49 1063 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 SERTM1A2A2V5 107 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 URADA6NGE7 173 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 TMEM233B4DJY2 109 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 B4E171 279 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 TMEM150CB9EJG8 249 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 ZSCAN9O15535 394 aaPredicted RBP14.04□□□□□ -0.16
CD48-203ENST00000613788 NDUFS4O43181 175 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 HCRTR1O43613 425 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 EDF1O60869 148 aaKnown RBP14.04□□□□□ -0.16
CD48-203ENST00000613788 PDYNP01213 254 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 SERPINA6P08185 405 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 KITP10721 976 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 HSD3B1P14060 373 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 PTX3P26022 381 aaPredicted RBP14.04□□□□□ -0.16
CD48-203ENST00000613788 HSD3B2P26439 372 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 TSPAN7P41732 249 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 ITGA1P56199 1179 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 CYP4F2P78329 520 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 MC2RQ01718 297 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 IL11RAQ14626 422 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 ABRAXAS2Q15018 415 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 TCHHL1Q5QJ38 904 aaPredicted RBP14.04□□□□□ -0.16
CD48-203ENST00000613788 WASHC2DQ5SRD0 308 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 RNF165Q6ZSG1 346 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 CHSY3Q70JA7 882 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 RAB11FIP2Q7L804 512 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 VN1R4Q7Z5H5 301 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 CSNK1A1LQ8N752 337 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 NT5CQ8TCD5 201 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 CREB3L4Q8TEY5 395 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 TWIST2Q8WVJ9 160 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 ZNF501Q96CX3 271 aaPredicted RBP14.04□□□□□ -0.16
CD48-203ENST00000613788 ZNF285Q96NJ3 590 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 FBXO8Q9NRD0 319 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 FARSBQ9NSD9 589 aaKnown RBP14.04□□□□□ -0.16
CD48-203ENST00000613788 OCIAD1Q9NX40 245 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 SIDT1Q9NXL6 827 aaKnown RBP14.04□□□□□ -0.16
CD48-203ENST00000613788 RARRES3Q9UL19 164 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 LOXL2Q9Y4K0 774 aa14.04□□□□□ -0.16
CD48-203ENST00000613788 MAGEB17A8MXT2 336 aa14.03□□□□□ -0.16
CD48-203ENST00000613788 AGRPO00253 132 aa14.03□□□□□ -0.16
CD48-203ENST00000613788 SLC28A1O00337 649 aa14.03□□□□□ -0.16
CD48-203ENST00000613788 POLR1CO15160 346 aaPredicted RBP14.03□□□□□ -0.16
CD48-203ENST00000613788 HDAC3O15379 428 aa14.03□□□□□ -0.16
CD48-203ENST00000613788 OR2B3O76000 313 aa14.03□□□□□ -0.16
CD48-203ENST00000613788 LSP1P33241 339 aa14.03□□□□□ -0.16
CD48-203ENST00000613788 STXBP1P61764 594 aaKnown RBP14.03□□□□□ -0.16
CD48-203ENST00000613788 GNGT1P63211 74 aa14.03□□□□□ -0.16
CD48-203ENST00000613788 CSTF3Q12996 717 aaKnown RBP14.03□□□□□ -0.16
CD48-203ENST00000613788 TARDBPQ13148 414 aaKnown RBP eCLIP14.03□□□□□ -0.16
CD48-203ENST00000613788 GRM7Q14831 915 aa14.03□□□□□ -0.16
CD48-203ENST00000613788 TLDC1Q6P9B6 456 aa14.03□□□□□ -0.16
CD48-203ENST00000613788 TRIM46Q7Z4K8 759 aa14.03□□□□□ -0.16
CD48-203ENST00000613788 VN1R5Q7Z5H4 357 aa14.03□□□□□ -0.16
CD48-203ENST00000613788 DDIASQ8IXT1 998 aa14.03□□□□□ -0.16
CD48-203ENST00000613788 WDR36Q8NI36 951 aaKnown RBP14.03□□□□□ -0.16
CD48-203ENST00000613788 CHMP6Q96FZ7 201 aa14.03□□□□□ -0.16
CD48-203ENST00000613788 SERPINI1Q99574 410 aa14.03□□□□□ -0.16
CD48-203ENST00000613788 CENPKQ9BS16 269 aa14.03□□□□□ -0.16
CD48-203ENST00000613788 DMRT3Q9NQL9 472 aa14.03□□□□□ -0.16
CD48-203ENST00000613788 ENAMQ9NRM1 1142 aa14.03□□□□□ -0.16
CD48-203ENST00000613788 MARCOQ9UEW3 520 aaPredicted RBP14.03□□□□□ -0.16
CD48-203ENST00000613788 ADAM21Q9UKJ8 722 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms