RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 VPS26BQ4G0F5 336 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 DEPDC1Q5TB30 811 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 ACSM2BQ68CK6 577 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 REP15Q6BDI9 236 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 FCRL6Q6DN72 434 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 RIPOR1Q6ZS17 1223 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 METTL4Q8N3J2 472 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 KRTCAP2Q8N6L1 136 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 EGLN2Q96KS0 407 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 EBPLQ9BY08 206 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 C11orf16Q9NQ32 467 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.65□□□□□ -0.22
USP39-220ENST00000613444 PCDHGA4Q9Y5G9 962 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 PCDHGA2Q9Y5H1 932 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 SPEGQ15772 3267 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 PATE3B3GLJ2 98 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 SAP18O00422 153 aaKnown RBP13.65□□□□□ -0.22
USP39-220ENST00000613444 CLEC3AO75596 197 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 MAPK1P28482 360 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 AHRP35869 848 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 NUDT2P50583 147 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 CLDN8P56748 225 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 PHEXP78562 749 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 HYAL2Q12891 473 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 STX5Q13190 355 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 DUOXA1Q1HG43 343 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 HLA-BQ31612 363 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 KHDRBS2Q5VWX1 349 aaKnown RBP13.65□□□□□ -0.22
USP39-220ENST00000613444 FBXO42Q6P3S6 717 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 COMMD6Q7Z4G1 85 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 OOSP2Q86WS3 158 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 RIMKLAQ8IXN7 391 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 SLC35F3Q8IY50 421 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 CLHC1Q8NHS4 586 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 SPDL1Q96EA4 605 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 CLMPQ9H6B4 373 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 EFCAB1Q9HAE3 211 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 IL21RQ9HBE5 538 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 NMRK1Q9NWW6 199 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 MAP10Q9P2G4 905 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 POMT2Q9UKY4 750 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 AP1M2Q9Y6Q5 423 aa13.65□□□□□ -0.22
USP39-220ENST00000613444 UNC13CQ8NB66 2214 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 A0A1W2PP18 115 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 CTSVO60911 334 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 UBXN7O94888 489 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 SEMA3DO95025 777 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 FKBP9O95302 570 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 TIA1P31483 386 aaKnown RBP eCLIP13.64□□□□□ -0.23
USP39-220ENST00000613444 GRK3P35626 688 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 TLR1Q15399 786 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 DSELQ8IZU8 1212 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 ARL10Q8N8L6 244 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 MFSD9Q8NBP5 474 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 TTLQ8NG68 377 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 WDR48Q8TAF3 677 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.64□□□□□ -0.23
USP39-220ENST00000613444 SAP25Q8TEE9 199 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 VPS33AQ96AX1 596 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 TSSK3Q96PN8 268 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 F2RL3Q96RI0 385 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.64□□□□□ -0.23
USP39-220ENST00000613444 LHX9Q9NQ69 397 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 PILRAQ9UKJ1 303 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 RNF215Q9Y6U7 377 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 BBIP1A8MTZ0 92 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 PLPP1O14494 284 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 GSTM2P28161 218 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 HNRNPH1P31943 449 aaKnown RBP13.64□□□□□ -0.23
USP39-220ENST00000613444 MXRA7P84157 204 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 ADPRMQ3LIE5 342 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 DNAL1Q4LDG9 190 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 C8orf82Q6P1X6 216 aaPredicted RBP13.64□□□□□ -0.23
USP39-220ENST00000613444 FIGLAQ6QHK4 219 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 VN1R4Q7Z5H5 301 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 UBE3DQ7Z6J8 389 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 ZUFSPQ96AP4 578 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 FCRL4Q96PJ5 515 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 SLC38A3Q99624 504 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 DPY30Q9C005 99 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 ABCG4Q9H172 646 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 ANKMY1Q9P2S6 941 aa13.64□□□□□ -0.23
USP39-220ENST00000613444 NUP214P35658 2090 aaPredicted RBP13.63□□□□□ -0.23
USP39-220ENST00000613444 A0A0J9YY10 115 aa13.63□□□□□ -0.23
USP39-220ENST00000613444 LRIT2A6NDA9 550 aa13.63□□□□□ -0.23
USP39-220ENST00000613444 PRAMEF10O60809 474 aa13.63□□□□□ -0.23
USP39-220ENST00000613444 CFIP05156 583 aa13.63□□□□□ -0.23
USP39-220ENST00000613444 PVRP15151 417 aa13.63□□□□□ -0.23
USP39-220ENST00000613444 PCSK2P16519 638 aa13.63□□□□□ -0.23
USP39-220ENST00000613444 CAPZBP47756 277 aa13.63□□□□□ -0.23
USP39-220ENST00000613444 KCNK10P57789 538 aa13.63□□□□□ -0.23
USP39-220ENST00000613444 C21orf58P58505 322 aa13.63□□□□□ -0.23
USP39-220ENST00000613444 RELAQ04206 551 aa13.63□□□□□ -0.23
USP39-220ENST00000613444 COQ5Q5HYK3 327 aa13.63□□□□□ -0.23
USP39-220ENST00000613444 SLC23A3Q6PIS1 610 aa13.63□□□□□ -0.23
USP39-220ENST00000613444 GATAD2AQ86YP4 633 aa13.63□□□□□ -0.23
USP39-220ENST00000613444 GLB1L3Q8NCI6 653 aaPredicted RBP13.63□□□□□ -0.23
USP39-220ENST00000613444 CEP76Q8TAP6 659 aa13.63□□□□□ -0.23
USP39-220ENST00000613444 BAHD1Q8TBE0 780 aaPredicted RBP13.63□□□□□ -0.23
USP39-220ENST00000613444 OR2A5Q96R48 311 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms