RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 CAMKVQ8NCB2 501 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 MOCOSQ96EN8 888 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 RUFY1Q96T51 708 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 EFHD1Q9BUP0 239 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 EFCAB11Q9BUY7 163 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 PITHD1Q9GZP4 211 aaPredicted RBP15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 MKS1Q9NXB0 559 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 PCTPQ9UKL6 214 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 NDUFS4O43181 175 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 PLIN3O60664 434 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 KATNA1O75449 491 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 PROCP04070 461 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 RPS17P08708 135 aaKnown RBP15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 ATP5F1P24539 256 aaPredicted RBP15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 PIK3CGP48736 1102 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 TMPRSS3P57727 454 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 SNRPNP63162 240 aaKnown RBP15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 PWP1Q13610 501 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 CCDC153Q494R4 210 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 NKAIN1Q4KMZ8 207 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 LRIG3Q6UXM1 1119 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 CCDC81Q6ZN84 652 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 GOLGA7Q7Z5G4 137 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 METTL27Q8N6F8 245 aaPredicted RBP15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 BANPQ8N9N5 519 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 KCT2Q8NC54 265 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 APOPT1Q96IL0 206 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 C1QTNF3Q9BXJ4 246 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 C12orf65Q9H3J6 166 aaKnown RBP15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 NT5DC2Q9H857 520 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 IPPKQ9H8X2 491 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 CPNE5Q9HCH3 593 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 SLC22A11Q9NSA0 550 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 KCND3Q9UK17 655 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 PCDHGA6Q9Y5G7 932 aa15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 DSPP15924 2871 aaKnown RBP15.75■□□□□ 0.11
CCDC28A-202ENST00000611852 RGS16O15492 202 aaPredicted RBP15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 ONECUT2O95948 504 aa15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 RAB40ALP0C0E4 278 aa15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 HERVK_113P63132 956 aa15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 LAPTM5Q13571 262 aa15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 FAM53BQ14153 422 aa15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 SLC9A5Q14940 896 aa15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 TMEM214Q6NUQ4 689 aaKnown RBP15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 PRMT9Q6P2P2 845 aa15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 TRPV3Q8NET8 790 aa15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 ZDHHC19Q8WVZ1 309 aaPredicted RBP15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 MVB12AQ96EY5 273 aa15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 SLC45A3Q96JT2 553 aa15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 NSUN5Q96P11 429 aaKnown RBP15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 ERVK-6Q9BXR3 956 aa15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 GPR87Q9BY21 358 aa15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 FAM117AQ9C073 453 aa15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 DRC3Q9H069 523 aa15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 ZBTB26Q9HCK0 441 aa15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 ZNF490Q9ULM2 529 aaPredicted RBP15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 MRPS2Q9Y399 296 aaKnown RBP15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 MRPS18BQ9Y676 258 aaKnown RBP15.74■□□□□ 0.11
CCDC28A-202ENST00000611852 C9J4A7 227 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 G3V2L1 256 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 K7ENP7 123 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 FOXS1O43638 330 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 SERPIND1P05546 499 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 ATXN8OSP0DMR3 200 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 OR1D4P47884 311 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 RPS15P62841 145 aaKnown RBP15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 CYP4F2P78329 520 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 HYAL2Q12891 473 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 NCF4Q15080 339 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 NDUFA9Q16795 377 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 PAGE2BQ5JRK9 111 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 INO80CQ6PI98 192 aaPredicted RBP15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 C19orf48Q6RUI8 117 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 ZYG11AQ6WRX3 759 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 RPS27LQ71UM5 84 aaKnown RBP15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 CROCCP2Q86T23 111 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 SLC22A9Q8IVM8 553 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 ENDOVQ8N8Q3 282 aaKnown RBP15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 TTLQ8NG68 377 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 NT5CQ8TCD5 201 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 CREB3L4Q8TEY5 395 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 ZNF483Q8TF39 744 aaPredicted RBP15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 ZBTB9Q96C00 473 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 CRELD1Q96HD1 420 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 TMEM237Q96Q45 408 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 NOL11Q9H8H0 719 aaKnown RBP15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 ACTR8Q9H981 624 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 IFT80Q9P2H3 777 aaPredicted RBP15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 FARSAQ9Y285 508 aaKnown RBP15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 MAU2Q9Y6X3 613 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 OR7A17O14581 309 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 UGDHO60701 494 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 SERPINA6P08185 405 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 CREB1P16220 341 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 IMPDH1P20839 514 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 GSTM2P28161 218 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 PTPN4P29074 926 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 PRKAA2P54646 552 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 RGS1Q08116 209 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms