RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 KLF13Q9Y2Y9 288 aaPredicted RBP5.94□□□□□ -1.46
CUX1-220ENST00000607092 SLC22A7Q9Y694 548 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 AKAP6Q13023 2319 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 A0A1W2PPV9 198 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 MAGEB16A2A368 324 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 URADA6NGE7 173 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 GABRR3A8MPY1 467 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 MAGEB17A8MXT2 336 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 TFECO14948 347 aaPredicted RBP5.93□□□□□ -1.46
CUX1-220ENST00000607092 FOXS1O43638 330 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 NME2P1O60361 137 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 SLC25A12O75746 678 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 F10P00742 488 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 IFNB1P01574 187 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 OGNP20774 298 aaKnown RBP5.93□□□□□ -1.46
CUX1-220ENST00000607092 NME2P22392 152 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 PSMB5P28074 263 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 CD96P40200 585 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 BCL6P41182 706 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 XCR1P46094 333 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 BDKRB1P46663 353 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 EIF3BP55884 814 aaKnown RBP5.93□□□□□ -1.46
CUX1-220ENST00000607092 CSNK1G2P78368 415 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 KIF5AQ12840 1032 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 KLF1Q13351 362 aaPredicted RBP5.93□□□□□ -1.46
CUX1-220ENST00000607092 MAPKAPK3Q16644 382 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 HKDC1Q2TB90 917 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 SEL1L2Q5TEA6 688 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 RGS9BPQ6ZS82 235 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 GALNTL5Q7Z4T8 443 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 RPS19BP1Q86WX3 136 aaKnown RBP5.93□□□□□ -1.46
CUX1-220ENST00000607092 DOLPP1Q86YN1 238 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 CRLF3Q8IUI8 442 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 ANKMY2Q8IV38 441 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 SIAH3Q8IW03 269 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 PALM2Q8IXS6 379 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 KRT222Q8N1A0 295 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 PLPP5Q8NEB5 264 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 C7orf57Q8NEG2 295 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 OR51Q1Q8NH59 317 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 LILRB4Q8NHJ6 448 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 MAIP1Q8WWC4 291 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 ZNF592Q92610 1267 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 LRRC46Q96FV0 321 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 FRMD6Q96NE9 622 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 DMRTA2Q96SC8 542 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 ZNF559Q9BR84 538 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 TRIM51Q9BSJ1 452 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 TP63Q9H3D4 680 aaPredicted RBP5.93□□□□□ -1.46
CUX1-220ENST00000607092 TRIM45Q9H8W5 580 aaPredicted RBP5.93□□□□□ -1.46
CUX1-220ENST00000607092 ETNK1Q9HBU6 452 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 CCDC177Q9NQR7 707 aaPredicted RBP5.93□□□□□ -1.46
CUX1-220ENST00000607092 KLHL1Q9NR64 748 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 INTS10Q9NVR2 710 aaKnown RBP5.93□□□□□ -1.46
CUX1-220ENST00000607092 SLC2A6Q9UGQ3 507 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 CIDEBQ9UHD4 219 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 TAC3Q9UHF0 121 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 NFS1Q9Y697 457 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 COMMD10Q9Y6G5 202 aa5.93□□□□□ -1.46
CUX1-220ENST00000607092 EPN1Q9Y6I3 576 aaPredicted RBP5.93□□□□□ -1.46
CUX1-220ENST00000607092 NCOA6Q14686 2063 aaPredicted RBP5.93□□□□□ -1.46
CUX1-220ENST00000607092 TLN2Q9Y4G6 2542 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 INTS1Q8N201 2190 aaKnown RBP5.92□□□□□ -1.46
CUX1-220ENST00000607092 IQCF5A8MTL0 148 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 ARHGEF33A8MVX0 844 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 E7ENX8 843 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 ACOT7O00154 380 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 NEURL1O76050 574 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 ZWINTO95229 277 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 TPOP07202 933 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 HOXD4P09016 255 aaPredicted RBP5.92□□□□□ -1.46
CUX1-220ENST00000607092 MPC1LP0DKB6 136 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 CD99P14209 185 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 FOSL1P15407 271 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 HPDP32754 393 aaPredicted RBP5.92□□□□□ -1.46
CUX1-220ENST00000607092 TRHRP34981 398 aaPredicted RBP5.92□□□□□ -1.46
CUX1-220ENST00000607092 KIR3DL1P43629 444 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 RGS4P49798 205 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 HLCSP50747 726 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 ART1P52961 327 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 OR4D2P58180 307 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 PMP22Q01453 160 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 TAP2Q03519 686 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 TBX2Q13207 712 aaPredicted RBP5.92□□□□□ -1.46
CUX1-220ENST00000607092 GBX1Q14549 363 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 USP10Q14694 798 aaKnown RBP5.92□□□□□ -1.46
CUX1-220ENST00000607092 ABRAXAS2Q15018 415 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 TERF2Q15554 542 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 TYSND1Q2T9J0 566 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 KLHL38Q2WGJ6 581 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 SFT2D3Q587I9 215 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 KIAA0930Q6ICG6 404 aaPredicted RBP5.92□□□□□ -1.46
CUX1-220ENST00000607092 SPINK14Q6IE38 97 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 TMEM214Q6NUQ4 689 aaKnown RBP5.92□□□□□ -1.46
CUX1-220ENST00000607092 UGT3A1Q6NUS8 523 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 PAPD4Q6PIY7 484 aaKnown RBP5.92□□□□□ -1.46
CUX1-220ENST00000607092 SUSD1Q6UWL2 747 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 THSD4Q6ZMP0 1018 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 ANKRD37Q7Z713 158 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 KIAA1328Q86T90 577 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms