RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 ANKHQ9HCJ1 492 aa12.42□□□□□ -0.42
RPS28-204ENST00000602140 PPP2R2CQ9Y2T4 447 aa12.42□□□□□ -0.42
RPS28-204ENST00000602140 CCL21O00585 134 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 RDH16O75452 317 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 WISP2O76076 250 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 CDH1P12830 882 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 AGTR2P50052 363 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 ST13P50502 369 aaKnown RBP12.41□□□□□ -0.42
RPS28-204ENST00000602140 CCZ1BP86790 482 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 CCZ1P86791 482 aaPredicted RBP12.41□□□□□ -0.42
RPS28-204ENST00000602140 ZNF766Q5HY98 468 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 ACER2Q5QJU3 275 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 CAPN13Q6MZZ7 669 aaPredicted RBP12.41□□□□□ -0.42
RPS28-204ENST00000602140 H3F3CQ6NXT2 135 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 PAQR3Q6TCH7 311 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 PDSS2Q86YH6 399 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 PPIL6Q8IXY8 311 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 BEST3Q8N1M1 668 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 C2CD4AQ8NCU7 369 aaPredicted RBP12.41□□□□□ -0.42
RPS28-204ENST00000602140 SLC13A3Q8WWT9 602 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 ITLN2Q8WWU7 325 aaPredicted RBP12.41□□□□□ -0.42
RPS28-204ENST00000602140 CCDC120Q96HB5 630 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 PBKQ96KB5 322 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 RBCK1Q9BYM8 510 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 UNKQ9C0B0 810 aaKnown RBP12.41□□□□□ -0.42
RPS28-204ENST00000602140 TAS2R13Q9NYV9 303 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 SUCOQ9UBS9 1254 aaKnown RBP12.41□□□□□ -0.42
RPS28-204ENST00000602140 SH3BGRL2Q9UJC5 107 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 JRKLQ9Y4A0 524 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 ABCA12Q86UK0 2595 aa12.41□□□□□ -0.42
RPS28-204ENST00000602140 ZNF860A6NHJ4 632 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 SLC16A5O15375 505 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 CDC123O75794 336 aaPredicted RBP12.4□□□□□ -0.42
RPS28-204ENST00000602140 SLC35G6P0C7Q6 338 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 NPPBP16860 134 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 PGAM1P18669 254 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 CCND1P24385 295 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 GRNP28799 593 aaKnown RBP12.4□□□□□ -0.42
RPS28-204ENST00000602140 GRK3P35626 688 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 CA7P43166 264 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 CDKN2DP55273 166 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 RBPJQ06330 500 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 ACTN3Q08043 901 aaPredicted RBP12.4□□□□□ -0.42
RPS28-204ENST00000602140 SP140Q13342 867 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 ART3Q13508 389 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 TUBA3CQ13748 450 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 NAA30Q147X3 362 aaPredicted RBP12.4□□□□□ -0.42
RPS28-204ENST00000602140 CRYMQ14894 314 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 EXT1Q16394 746 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 PHKG1Q16816 387 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.4□□□□□ -0.42
RPS28-204ENST00000602140 SFT2D3Q587I9 215 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 RBM20Q5T481 1227 aaKnown RBP12.4□□□□□ -0.42
RPS28-204ENST00000602140 TUBA3EQ6PEY2 450 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 PAPD4Q6PIY7 484 aaKnown RBP12.4□□□□□ -0.42
RPS28-204ENST00000602140 LCTLQ6UWM7 567 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 PCGF5Q86SE9 256 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 MRGPRGQ86SM5 289 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 MYO1HQ8N1T3 1032 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 MFSD9Q8NBP5 474 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 M1APQ8TC57 530 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 LINGO1Q96FE5 620 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 PEX11GQ96HA9 241 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 SIGLEC12Q96PQ1 595 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 NAP1L3Q99457 506 aaPredicted RBP12.4□□□□□ -0.42
RPS28-204ENST00000602140 SGPP1Q9BX95 441 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 FAM129AQ9BZQ8 928 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 KLHL1Q9NR64 748 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 NAALAD2Q9Y3Q0 740 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 SLC22A7Q9Y694 548 aa12.4□□□□□ -0.42
RPS28-204ENST00000602140 CSMD1Q96PZ7 3565 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 PGRMC1O00264 195 aaKnown RBP12.39□□□□□ -0.43
RPS28-204ENST00000602140 TTI1O43156 1089 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 BANF1O75531 89 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 HIST1H2AGP0C0S8 130 aaPredicted RBP12.39□□□□□ -0.43
RPS28-204ENST00000602140 HIST1H2ADP20671 130 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 GABRB3P28472 473 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 CD96P40200 585 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 MEF2AQ02078 507 aaPredicted RBP12.39□□□□□ -0.43
RPS28-204ENST00000602140 RHAGQ02094 409 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 DHX9Q08211 1270 aaKnown RBP12.39□□□□□ -0.43
RPS28-204ENST00000602140 ABRAXAS2Q15018 415 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 NSDHLQ15738 373 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 MEP1AQ16819 746 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 ZXDCQ2QGD7 858 aaPredicted RBP12.39□□□□□ -0.43
RPS28-204ENST00000602140 RNASEH2BQ5TBB1 312 aaKnown RBP12.39□□□□□ -0.43
RPS28-204ENST00000602140 CRLF3Q8IUI8 442 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 MCEMP1Q8IX19 187 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 PLPP5Q8NEB5 264 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 OR5T3Q8NGG3 340 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 GABPB2Q8TAK5 448 aaPredicted RBP12.39□□□□□ -0.43
RPS28-204ENST00000602140 GRK7Q8WTQ7 553 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 TSLPQ969D9 159 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 PYCR2Q96C36 320 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 MOCOSQ96EN8 888 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 HIST1H2AHQ96KK5 128 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 LPAR4Q99677 370 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 NPAS2Q99743 824 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 HIST1H2AJQ99878 128 aa12.39□□□□□ -0.43
RPS28-204ENST00000602140 UTP23Q9BRU9 249 aaKnown RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms