RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 CCDC138Q96M89 665 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 NRTNQ99748 197 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 CD244Q9BZW8 370 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 TWSG1Q9GZX9 223 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 RAB33BQ9H082 229 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 ZBTB26Q9HCK0 441 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 TNFRSF12AQ9NP84 129 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 OPTCQ9UBM4 332 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 PADI1Q9ULC6 663 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 MAN2B2Q9Y2E5 1009 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 RAP2CQ9Y3L5 183 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 TNPO3Q9Y5L0 923 aaKnown RBP12.17□□□□□ -0.46
UPF1-208ENST00000600012 USP9XQ93008 2570 aaPredicted RBP12.17□□□□□ -0.46
UPF1-208ENST00000600012 RELNP78509 3460 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 ICE1Q9Y2F5 2266 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 HEATR5BQ9P2D3 2071 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 A0A1B0GTL3 188 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 CDC14CA4D256 554 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 TMEM233B4DJY2 109 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 C21orf140B9A014 251 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 K7EPI3 171 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 RRP9O43818 475 aaKnown RBP12.16□□□□□ -0.46
UPF1-208ENST00000600012 SLC16A8O95907 504 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 RPN2P04844 631 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 FURINP09958 794 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 TROVE2P10155 538 aaKnown RBP eCLIP12.16□□□□□ -0.46
UPF1-208ENST00000600012 NELFEP18615 380 aaKnown RBP12.16□□□□□ -0.46
UPF1-208ENST00000600012 GGT5P36269 586 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 PRKAA1Q13131 559 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 NAE1Q13564 534 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 TSTA3Q13630 321 aaPredicted RBP12.16□□□□□ -0.46
UPF1-208ENST00000600012 KRT33BQ14525 404 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 SH2D4BQ5SQS7 431 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 TTC23LQ6PF05 361 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 FAM92BQ6ZTR7 304 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 LRRC70Q7Z2Q7 622 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 SPATA21Q7Z572 469 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 APLFQ8IW19 511 aaPredicted RBP12.16□□□□□ -0.46
UPF1-208ENST00000600012 TBC1D21Q8IYX1 336 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 SNX31Q8N9S9 440 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 RFWD2Q8NHY2 731 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 MAGEC3Q8TD91 643 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 AGAP11Q8TF27 550 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 ZNF480Q8WV37 535 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 ATL1Q8WXF7 558 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 RAD51AP1Q96B01 352 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 FCRL4Q96PJ5 515 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 TRMOQ9BU70 441 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 PDE7BQ9NP56 450 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 MID1IP1Q9NPA3 183 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 LHX9Q9NQ69 397 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 ABCF3Q9NUQ8 709 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.16□□□□□ -0.46
UPF1-208ENST00000600012 SEMA5BQ9P283 1151 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 ZDHHC2Q9UIJ5 367 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 RARRES3Q9UL19 164 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 FIS1Q9Y3D6 152 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 ANGPTL3Q9Y5C1 460 aa12.16□□□□□ -0.46
UPF1-208ENST00000600012 TNRC6AQ8NDV7 1962 aaKnown RBP12.16□□□□□ -0.46
UPF1-208ENST00000600012 PIPSLA2A3N6 862 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 K7EM74 188 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 OR7A17O14581 309 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 SNX3O60493 162 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 PRDX3P30048 256 aaKnown RBP12.15□□□□□ -0.46
UPF1-208ENST00000600012 ARL1P40616 181 aaPredicted RBP12.15□□□□□ -0.46
UPF1-208ENST00000600012 TBPL1P62380 186 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 LCP2Q13094 533 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 TUBB3Q13509 450 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 FASTKQ14296 549 aaKnown RBP12.15□□□□□ -0.46
UPF1-208ENST00000600012 KLHL35Q6PF15 583 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 MAVSQ7Z434 540 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 PIGWQ7Z7B1 504 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 SYVN1Q86TM6 617 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 BPHLQ86WA6 291 aaPredicted RBP12.15□□□□□ -0.46
UPF1-208ENST00000600012 SYTL1Q8IYJ3 562 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 C2orf73Q8N5S3 287 aaPredicted RBP12.15□□□□□ -0.46
UPF1-208ENST00000600012 OR52B6Q8NGF0 335 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 PIWIL2Q8TC59 973 aaKnown RBP12.15□□□□□ -0.46
UPF1-208ENST00000600012 CT55Q8WUE5 264 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 SLC41A2Q96JW4 573 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 KCNA7Q96RP8 456 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 TRIM55Q9BYV6 548 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 ILKAPQ9H0C8 392 aaPredicted RBP12.15□□□□□ -0.46
UPF1-208ENST00000600012 NOL11Q9H8H0 719 aaKnown RBP12.15□□□□□ -0.46
UPF1-208ENST00000600012 EML4Q9HC35 981 aaKnown RBP12.15□□□□□ -0.46
UPF1-208ENST00000600012 DNAJC11Q9NVH1 559 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 HAO1Q9UJM8 370 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 DCTN4Q9UJW0 460 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 SLC22A14Q9Y267 594 aa12.15□□□□□ -0.46
UPF1-208ENST00000600012 MED13Q9UHV7 2174 aa12.15□□□□□ -0.47
UPF1-208ENST00000600012 OR4F21O95013 312 aa12.14□□□□□ -0.47
UPF1-208ENST00000600012 TIAF1O95411 115 aa12.14□□□□□ -0.47
UPF1-208ENST00000600012 TGDSO95455 350 aa12.14□□□□□ -0.47
UPF1-208ENST00000600012 EPORP19235 508 aa12.14□□□□□ -0.47
UPF1-208ENST00000600012 RPL14P50914 215 aaKnown RBP12.14□□□□□ -0.47
UPF1-208ENST00000600012 PNLIPRP1P54315 467 aa12.14□□□□□ -0.47
UPF1-208ENST00000600012 MLLT10P55197 1068 aa12.14□□□□□ -0.47
UPF1-208ENST00000600012 FOXA1P55317 472 aa12.14□□□□□ -0.47
UPF1-208ENST00000600012 NAA20P61599 178 aa12.14□□□□□ -0.47
UPF1-208ENST00000600012 ACY1Q03154 408 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms