RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 TNRC6AQ8NDV7 1962 aaKnown RBP13.16□□□□□ -0.3
UPF1-205ENST00000598209 CCDC189A1A4V9 331 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 VSTM2BA6NLU5 285 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 SYCE1LA8MT33 242 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 CLGNO14967 610 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 NDUFS4O43181 175 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 CCNT2O60583 730 aaKnown RBP13.16□□□□□ -0.3
UPF1-205ENST00000598209 H2AFYO75367 372 aaKnown RBP13.16□□□□□ -0.3
UPF1-205ENST00000598209 RFPL1O75677 317 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 C1QL1O75973 258 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 SERPIND1P05546 499 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 SNRPAP09012 282 aaKnown RBP13.16□□□□□ -0.3
UPF1-205ENST00000598209 SLC35G6P0C7Q6 338 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 C1GALT1C1LP0DN25 315 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 GCAP28676 217 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 AHRP35869 848 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 AVPR1BP47901 424 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 OCA2Q04671 838 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 CHAF1BQ13112 559 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 ATP1A4Q13733 1029 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 RBBP5Q15291 538 aaKnown RBP13.16□□□□□ -0.3
UPF1-205ENST00000598209 PDK4Q16654 411 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 LGSNQ5TDP6 509 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 ATG9BQ674R7 924 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 ADGRD1Q6QNK2 874 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 SLCO4C1Q6ZQN7 724 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 SHISA6Q6ZSJ9 500 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 MRGPREQ86SM8 312 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 PLD6Q8N2A8 252 aaKnown RBP13.16□□□□□ -0.3
UPF1-205ENST00000598209 AMER3Q8N944 861 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 KCT2Q8NC54 265 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 ZCCHC10Q8TBK6 192 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 STT3BQ8TCJ2 826 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 MOCOSQ96EN8 888 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 GPR78Q96P69 363 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 YIPF2Q9BWQ6 316 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 CAPS2Q9BXY5 557 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 TRIM55Q9BYV6 548 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 CD244Q9BZW8 370 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 TRPC4Q9UBN4 977 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 ZFP69BQ9UJL9 534 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 TUBD1Q9UJT1 453 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 PIEZO2Q9H5I5 2752 aa13.16□□□□□ -0.3
UPF1-205ENST00000598209 IGLV3-12A0A075B6K2 115 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 MAP2K7O14733 419 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 FFAR3O14843 346 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 GPR42O15529 346 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 DNAJB5O75953 348 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 NSA2O95478 260 aaKnown RBP13.15□□□□□ -0.3
UPF1-205ENST00000598209 ZGLP1P0C6A0 271 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 MTHFD2P13995 350 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 IL1RNP18510 177 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 MMP11P24347 488 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 CXCR2P25025 360 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 AGTR2P50052 363 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 RGS1Q08116 209 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 PWP1Q13610 501 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 SLBPQ14493 270 aaKnown RBP eCLIP13.15□□□□□ -0.3
UPF1-205ENST00000598209 VWA2Q5GFL6 755 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 TECRLQ5HYJ1 363 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 PRSS41Q7RTY9 318 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 LRRC70Q7Z2Q7 622 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 PPP1R32Q7Z5V6 425 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 PRSS58Q8IYP2 241 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 ANKRD53Q8N9V6 530 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 OR9A4Q8NGU2 314 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 NT5CQ8TCD5 201 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 UBTD2Q8WUN7 234 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.15□□□□□ -0.3
UPF1-205ENST00000598209 MIEF2Q96C03 454 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 IP6K3Q96PC2 410 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 ING2Q9H160 280 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 ANKHQ9HCJ1 492 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 ACSS2Q9NR19 701 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 ZNF358Q9NW07 568 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 MAP4K5Q9Y4K4 846 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 ASB1Q9Y576 335 aa13.15□□□□□ -0.3
UPF1-205ENST00000598209 DOCK10Q96BY6 2186 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 H0YIG0 161 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 MKRN2OSH3BPM6 223 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 PEX12O00623 359 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 PRAMEF4O60810 478 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 SLU7O95391 586 aaKnown RBP13.14□□□□□ -0.31
UPF1-205ENST00000598209 COL6A2P12110 1019 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 GFAPP14136 432 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 EPORP19235 508 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 RRADP55042 308 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 MAT1AQ00266 395 aaKnown RBP13.14□□□□□ -0.31
UPF1-205ENST00000598209 KLC1Q07866 573 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 SETDB1Q15047 1291 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 SYT16Q17RD7 645 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 TSNAXIP1Q2TAA8 658 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 XKR6Q5GH73 641 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 PRAMEF9Q5VWM5 478 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 MED25Q71SY5 747 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.14□□□□□ -0.31
UPF1-205ENST00000598209 KRT78Q8N1N4 520 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 ZNF843Q8N446 348 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 TMEM102Q8N9M5 508 aaPredicted RBP13.14□□□□□ -0.31
UPF1-205ENST00000598209 TRPV3Q8NET8 790 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms