RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 EMP3P54852 163 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 FOXA1P55317 472 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 IRF8Q02556 426 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 SRSF6Q13247 344 aaKnown RBP10.07□□□□□ -0.8
LIG1-210ENST00000596332 NAA25Q14CX7 972 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 UGT3A2Q3SY77 523 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 GGTA1PQ4G0N0 100 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 LIPMQ5VYY2 423 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 LIPJQ5W064 366 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 GRHL2Q6ISB3 625 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 RHBDD2Q6NTF9 364 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 FAM199XQ6PEV8 388 aaPredicted RBP10.07□□□□□ -0.8
LIG1-210ENST00000596332 TMIGD1Q6UXZ0 262 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 ZCCHC23Q6ZST2 131 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 FRMD7Q6ZUT3 714 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 COX15Q7KZN9 410 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 PRSS41Q7RTY9 318 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 PDSS2Q86YH6 399 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 SLC22A9Q8IVM8 553 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 DSELQ8IZU8 1212 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 SNIP1Q8TAD8 396 aaKnown RBP10.07□□□□□ -0.8
LIG1-210ENST00000596332 NT5CQ8TCD5 201 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 AGAP11Q8TF27 550 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 ZNF473Q8WTR7 871 aaKnown RBP10.07□□□□□ -0.8
LIG1-210ENST00000596332 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.07□□□□□ -0.8
LIG1-210ENST00000596332 NXPE2Q96DL1 559 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 PKNOX2Q96KN3 472 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 LRFN5Q96NI6 719 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 ZNF382Q96SR6 550 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 RUFY1Q96T51 708 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 SELENOSQ9BQE4 189 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 ZPBPQ9BS86 351 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 EFCAB11Q9BUY7 163 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 PITHD1Q9GZP4 211 aaPredicted RBP10.07□□□□□ -0.8
LIG1-210ENST00000596332 LHX9Q9NQ69 397 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 FARSBQ9NSD9 589 aaKnown RBP10.07□□□□□ -0.8
LIG1-210ENST00000596332 AKAP7Q9P0M2 348 aaPredicted RBP10.07□□□□□ -0.8
LIG1-210ENST00000596332 SERTAD3Q9UJW9 196 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 LAMA5O15230 3695 aa10.07□□□□□ -0.8
LIG1-210ENST00000596332 FER1L5A0AVI2 2057 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 MDC1Q14676 2089 aaKnown RBP10.06□□□□□ -0.8
LIG1-210ENST00000596332 LOC101059948A0A1B0GTJ6 334 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 HYKKA2RU49 373 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 PABPN1LA6NDY0 278 aaKnown RBP10.06□□□□□ -0.8
LIG1-210ENST00000596332 TM9SF1O15321 606 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 ZSCAN9O15535 394 aaPredicted RBP10.06□□□□□ -0.8
LIG1-210ENST00000596332 ITM2AO43736 263 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 UGDHO60701 494 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 KATNA1O75449 491 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 OR4F21O95013 312 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 CLDN9O95484 217 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 CHRNGP07510 517 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 RBMS1P29558 406 aaKnown RBP10.06□□□□□ -0.8
LIG1-210ENST00000596332 HNRNPH1P31943 449 aaKnown RBP10.06□□□□□ -0.8
LIG1-210ENST00000596332 PIK3CGP48736 1102 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 EFNA3P52797 238 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 CLN3Q13286 438 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 PWP1Q13610 501 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 ZRSR2Q15696 482 aaKnown RBP10.06□□□□□ -0.8
LIG1-210ENST00000596332 TCTE1Q5JU00 501 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 TCHHL1Q5QJ38 904 aaPredicted RBP10.06□□□□□ -0.8
LIG1-210ENST00000596332 TLDC1Q6P9B6 456 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 UNQ6494/PRO21346Q6UXR6 183 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 ADCK2Q7Z695 626 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 ASPGQ86U10 573 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 CSNK1A1LQ8N752 337 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 AMER3Q8N944 861 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 KDF1Q8NAX2 398 aaPredicted RBP10.06□□□□□ -0.8
LIG1-210ENST00000596332 GALNT6Q8NCL4 622 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 UTP15Q8TED0 518 aaKnown RBP10.06□□□□□ -0.8
LIG1-210ENST00000596332 SLC13A3Q8WWT9 602 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 FGF11Q92914 225 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 CCDC126Q96EE4 140 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 QRFPRQ96P65 431 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 KCNA7Q96RP8 456 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 AIF1LQ9BQI0 150 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 MS4A8Q9BY19 250 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 ZNF717Q9BY31 904 aaPredicted RBP10.06□□□□□ -0.8
LIG1-210ENST00000596332 MLXIPLQ9NP71 852 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 CUTCQ9NTM9 273 aa10.06□□□□□ -0.8
LIG1-210ENST00000596332 APC2O95996 2303 aa10.05□□□□□ -0.8
LIG1-210ENST00000596332 LRIT2A6NDA9 550 aa10.05□□□□□ -0.8
LIG1-210ENST00000596332 H3BQF6 201 aa10.05□□□□□ -0.8
LIG1-210ENST00000596332 MEN1O00255 615 aa10.05□□□□□ -0.8
LIG1-210ENST00000596332 BIRC5O15392 142 aa10.05□□□□□ -0.8
LIG1-210ENST00000596332 CLEC3AO75596 197 aa10.05□□□□□ -0.8
LIG1-210ENST00000596332 ZWINTO95229 277 aa10.05□□□□□ -0.8
LIG1-210ENST00000596332 ESRRBO95718 433 aa10.05□□□□□ -0.8
LIG1-210ENST00000596332 EIF2S1P05198 315 aaKnown RBP10.05□□□□□ -0.8
LIG1-210ENST00000596332 SERPINA6P08185 405 aa10.05□□□□□ -0.8
LIG1-210ENST00000596332 EIF2S3P41091 472 aaKnown RBP10.05□□□□□ -0.8
LIG1-210ENST00000596332 HNF4AP41235 474 aa10.05□□□□□ -0.8
LIG1-210ENST00000596332 HTR6P50406 440 aa10.05□□□□□ -0.8
LIG1-210ENST00000596332 FOXL2P58012 376 aa10.05□□□□□ -0.8
LIG1-210ENST00000596332 LCP2Q13094 533 aa10.05□□□□□ -0.8
LIG1-210ENST00000596332 MAP7Q14244 749 aa10.05□□□□□ -0.8
LIG1-210ENST00000596332 RBBP5Q15291 538 aaKnown RBP10.05□□□□□ -0.8
LIG1-210ENST00000596332 CPSF6Q16630 551 aaKnown RBP eCLIP10.05□□□□□ -0.8
LIG1-210ENST00000596332 MANEAQ5SRI9 462 aa10.05□□□□□ -0.8
LIG1-210ENST00000596332 MILR1Q7Z6M3 343 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 272.6 ms