RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 TCAF1Q9Y4C2 921 aa12.95□□□□□ -0.34
SHKBP1-208ENST00000595726 SCN2AQ99250 2005 aa12.95□□□□□ -0.34
SHKBP1-208ENST00000595726 TLN2Q9Y4G6 2542 aa12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 CCDC162PA2VCL2 907 aa12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 PGRMC1O00264 195 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 PDE9AO76083 593 aa12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 NUP107P57740 925 aa12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 ITIH4Q14624 930 aa12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 EMC4Q5J8M3 183 aa12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 AFTPHQ6ULP2 937 aa12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 ZNF534Q76KX8 674 aa12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 RNF44Q7L0R7 432 aa12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 SLC22A15Q8IZD6 547 aa12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 CLYBLQ8N0X4 340 aa12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 OR2L3Q8NG85 312 aa12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 OR2A1Q8NGT9 310 aa12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 METTL21AQ8WXB1 218 aa12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 ANP32BQ92688 251 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 PEX13Q92968 403 aa12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 OSBPL9Q96SU4 736 aa12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 ZFYVE21Q9BQ24 234 aa12.94□□□□□ -0.34
SHKBP1-208ENST00000595726 USP27XA6NNY8 438 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 IQCF5A8MTL0 148 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 KIF5CO60282 957 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 SLC25A12O75746 678 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 LY6G6DO95868 133 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 GOT2P00505 430 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 ANXA5P08758 320 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 TPSB2P20231 275 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 PCSK6P29122 969 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 SESN2P58004 480 aaPredicted RBP12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 TRIP13Q15645 432 aaPredicted RBP12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 TPSAB1Q15661 275 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 CYP1B1Q16678 543 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 MINDY4Q4G0A6 757 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 MFSD4BQ5TF39 518 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 UNC5DQ6UXZ4 953 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 PACS1Q6VY07 963 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 ZNF227Q86WZ6 799 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 CDC20BQ86Y33 519 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 DCUN1D3Q8IWE4 304 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 CSNK1A1LQ8N752 337 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 PPHLN1Q8NEY8 458 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 LKAAEAR1Q8TD35 194 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 NAP1L3Q99457 506 aaPredicted RBP12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 OLFM1Q99784 485 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 DPH7Q9BTV6 452 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 ACAT2Q9BWD1 397 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 CDCP1Q9H5V8 836 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 RASSF1Q9NS23 344 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 SNX12Q9UMY4 172 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 KLK4Q9Y5K2 254 aa12.93□□□□□ -0.34
SHKBP1-208ENST00000595726 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 A0A1W2PPV9 198 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 TCRBV7S3A2A0A539 114 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 OR2A25A4D2G3 310 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 CES2O00748 559 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 TFECO14948 347 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 PRPF4O43172 522 aaKnown RBP eCLIP12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 HS6ST1O60243 411 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 NME2P1O60361 137 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 OR56A5P0C7T3 313 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 NME2P22392 152 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 VPS41P49754 854 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 PRAMEP78395 509 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 CRADDP78560 199 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 CDK16Q00536 496 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 PLOD1Q02809 727 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 KCNJ11Q14654 390 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 CMPK2Q5EBM0 449 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 PCID2Q5JVF3 399 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 CCDC137Q6PK04 289 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 ARSKQ6UWY0 536 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 ANKRD37Q7Z713 158 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 LIX1LQ8IVB5 337 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 ARHGEF39Q8N4T4 335 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 HORMAD2Q8N7B1 307 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 OR4L1Q8NH43 312 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 ACTRT1Q8TDG2 376 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 MAGOHBQ96A72 148 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 MBD6Q96DN6 1003 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 MVB12AQ96EY5 273 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 IL22Q9GZX6 179 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 CHRAC1Q9NRG0 131 aa12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 RUVBL2Q9Y230 463 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-208ENST00000595726 AP3B1O00203 1094 aa12.91□□□□□ -0.34
SHKBP1-208ENST00000595726 QSOX1O00391 747 aa12.91□□□□□ -0.34
SHKBP1-208ENST00000595726 PHF2O75151 1096 aa12.91□□□□□ -0.34
SHKBP1-208ENST00000595726 GPC4O75487 556 aa12.91□□□□□ -0.34
SHKBP1-208ENST00000595726 KRT14P02533 472 aa12.91□□□□□ -0.34
SHKBP1-208ENST00000595726 STATHP02808 62 aa12.91□□□□□ -0.34
SHKBP1-208ENST00000595726 HEXAP06865 529 aa12.91□□□□□ -0.34
SHKBP1-208ENST00000595726 TFEBP19484 476 aa12.91□□□□□ -0.34
SHKBP1-208ENST00000595726 HOXC12P31275 282 aa12.91□□□□□ -0.34
SHKBP1-208ENST00000595726 COILP38432 576 aaPredicted RBP12.91□□□□□ -0.34
SHKBP1-208ENST00000595726 MAGEA6P43360 314 aa12.91□□□□□ -0.34
SHKBP1-208ENST00000595726 TERF1P54274 439 aa12.91□□□□□ -0.34
SHKBP1-208ENST00000595726 EMP3P54852 163 aa12.91□□□□□ -0.34
SHKBP1-208ENST00000595726 GPS1Q13098 491 aa12.91□□□□□ -0.34
SHKBP1-208ENST00000595726 SEMA3AQ14563 771 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms