RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.63□□□□□ -0.23
LIG3-205ENST00000585941 BIRC7Q96CA5 298 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 CENPNQ96H22 339 aaPredicted RBP13.63□□□□□ -0.23
LIG3-205ENST00000585941 QRFPRQ96P65 431 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 PHF12Q96QT6 1004 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 MYOCQ99972 504 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 CENPKQ9BS16 269 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 ACAT2Q9BWD1 397 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 SPATA9Q9BWV2 254 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 UGT2B28Q9BY64 529 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 SPNS1Q9H2V7 528 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 REEP4Q9H6H4 257 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 RPF2Q9H7B2 306 aaKnown RBP13.63□□□□□ -0.23
LIG3-205ENST00000585941 KIR3DX1Q9H7L2 352 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 AGPAT4Q9NRZ5 378 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 PCOLCE2Q9UKZ9 415 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 GMEB1Q9Y692 573 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 MAGEA13PA6NCF6 341 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 GABRR3A8MPY1 467 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 RNASET2O00584 256 aaKnown RBP13.62□□□□□ -0.23
LIG3-205ENST00000585941 EPN2O95208 641 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 RETP07949 1114 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 CCR5P51681 352 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 WNT3P56703 355 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 MEF2AQ02078 507 aaPredicted RBP13.62□□□□□ -0.23
LIG3-205ENST00000585941 HKDC1Q2TB90 917 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 FAM98BQ52LJ0 330 aaKnown RBP13.62□□□□□ -0.23
LIG3-205ENST00000585941 DUS1LQ6P1R4 473 aaKnown RBP13.62□□□□□ -0.23
LIG3-205ENST00000585941 ERICH5Q6P6B1 374 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 ENPP7Q6UWV6 458 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 GCNT7Q6ZNI0 430 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 FKBP9P1Q75LS8 142 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 PAGE2Q7Z2X7 111 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 SERPINA11Q86U17 422 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 ANKRD46Q86W74 232 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 SYNPOQ8N3V7 929 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 TBC1D19Q8N5T2 526 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 LMNTD1Q8N9Z9 388 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 LINC01555Q8NAE3 123 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 N4BP2L2Q92802 583 aaPredicted RBP13.62□□□□□ -0.23
LIG3-205ENST00000585941 REXO5Q96IC2 774 aaKnown RBP13.62□□□□□ -0.23
LIG3-205ENST00000585941 BMFQ96LC9 184 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 INPP5KQ9BT40 448 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 OR51B5Q9H339 312 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 PIF1Q9H611 641 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 HEATR5BQ9P2D3 2071 aa13.62□□□□□ -0.23
LIG3-205ENST00000585941 SHISA7A6NL88 538 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 C10orf142B7Z368 130 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 DENRO43583 198 aaKnown RBP13.61□□□□□ -0.23
LIG3-205ENST00000585941 NARSO43776 548 aaKnown RBP13.61□□□□□ -0.23
LIG3-205ENST00000585941 ASGR2P07307 311 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 LAMP1P11279 417 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 IL1RNP18510 177 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 OXTRP30559 389 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 SHMT2P34897 504 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 CLCN2P51788 898 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 CLDN2P57739 230 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 FOLH1Q04609 750 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 IER5LQ5T953 404 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 INTS11Q5TA45 600 aaKnown RBP13.61□□□□□ -0.23
LIG3-205ENST00000585941 DEPDC1Q5TB30 811 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 KHDRBS2Q5VWX1 349 aaKnown RBP13.61□□□□□ -0.23
LIG3-205ENST00000585941 HMBOX1Q6NT76 420 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 ZNF852Q6ZMS4 543 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 SLC9B2Q86UD5 537 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 NATD1Q8N6N6 113 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 ZNF740Q8NDX6 193 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 OR52E1Q8NGJ3 308 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 C16orf78Q8WTQ4 265 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 HMGB4Q8WW32 186 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 OR1E3Q8WZA6 343 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 IKZF5Q9H5V7 419 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 DMTF1Q9Y222 760 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.61□□□□□ -0.23
LIG3-205ENST00000585941 PLEKHM1Q9Y4G2 1056 aa13.61□□□□□ -0.23
LIG3-205ENST00000585941 TRBC2A0A5B9 178 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 CHURC1-FNTBB4DL54 471 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 PRAMEF26H0Y7S4 382 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 CLIC1O00299 241 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 CXCR6O00574 342 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 SH3BGRLO75368 114 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 GSNP06396 782 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 RAP2AP10114 183 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 PIM1P11309 404 aaPredicted RBP13.6□□□□□ -0.23
LIG3-205ENST00000585941 ZNF26P17031 533 aaPredicted RBP13.6□□□□□ -0.23
LIG3-205ENST00000585941 GPX2P18283 190 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 GRK3P35626 688 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 CDKN2CP42773 168 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 RABIFP47224 123 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 GZMMP51124 257 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 CHRNB3Q05901 458 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 PDE7AQ13946 482 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 SMAD2Q15796 467 aaKnown RBP13.6□□□□□ -0.23
LIG3-205ENST00000585941 GTDC1Q4AE62 458 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 FAM71E1Q6IPT2 247 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 SYT13Q7L8C5 426 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 VN1R5Q7Z5H4 357 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 AMIGO2Q86SJ2 522 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 OR2A1Q8NGT9 310 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 GATA6Q92908 595 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms