RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 SOHLH2Q9NX45 425 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 KLHL3Q9UH77 587 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 CCL27Q9Y4X3 112 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 PCDHGA1Q9Y5H4 931 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 ASXL3Q9C0F0 2248 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 PIEZO1Q92508 2521 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 IGHV5-51A0A0C4DH38 117 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 A0A0J9YVX5 310 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 D6RAR5 112 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 NRP2O60462 931 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 SRPX2O60687 465 aaPredicted RBP10.27□□□□□ -0.77
SS18-213ENST00000579640 CTSVO60911 334 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 SEMA3DO95025 777 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 SERPINA6P08185 405 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 PRR35P0CG20 571 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 THRAP10827 490 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 CDK4P11802 303 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 HOXB3P14651 431 aaPredicted RBP10.27□□□□□ -0.77
SS18-213ENST00000579640 LBPP18428 481 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 MLLT3P42568 568 aaPredicted RBP10.27□□□□□ -0.77
SS18-213ENST00000579640 ARFIP1P53367 373 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 RPS13P62277 151 aaKnown RBP10.27□□□□□ -0.77
SS18-213ENST00000579640 HSD11B2P80365 405 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 CYP4F3Q08477 520 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 MAD2L1Q13257 205 aaPredicted RBP10.27□□□□□ -0.77
SS18-213ENST00000579640 TRA2AQ13595 282 aaKnown RBP eCLIP10.27□□□□□ -0.77
SS18-213ENST00000579640 PWP1Q13610 501 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 CUL3Q13618 768 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 NR6A1Q15406 480 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 ATP6AP1LQ52LC2 224 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 MANEAQ5SRI9 462 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 TMTC4Q5T4D3 741 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 METTL21CQ5VZV1 264 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 FAM219BQ5XKK7 198 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 NXNQ6DKJ4 435 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 OGFOD2Q6N063 350 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 CHSY3Q70JA7 882 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 LARP4Q71RC2 724 aaKnown RBP eCLIP10.27□□□□□ -0.77
SS18-213ENST00000579640 VN1R5Q7Z5H4 357 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 GLRX5Q86SX6 157 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 ASPGQ86U10 573 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 PARP9Q8IXQ6 854 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 CACNA2D3Q8IZS8 1091 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 DNAJC22Q8N4W6 341 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 CAMKVQ8NCB2 501 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 OR2T11Q8NH01 316 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 NT5CQ8TCD5 201 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 CREB3L4Q8TEY5 395 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 PPP1R36Q96LQ0 422 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 HBEGFQ99075 208 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 MS4A8Q9BY19 250 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 WDR55Q9H6Y2 383 aaPredicted RBP10.27□□□□□ -0.77
SS18-213ENST00000579640 AKTIPQ9H8T0 292 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 MRGBPQ9NV56 204 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 AHSPQ9NZD4 102 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 TMEM9Q9P0T7 183 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 VPS29Q9UBQ0 182 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 ATXN7L1Q9ULK2 861 aaPredicted RBP10.27□□□□□ -0.77
SS18-213ENST00000579640 SLC12A4Q9UP95 1085 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 TRIM33Q9UPN9 1127 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 PLCL2Q9UPR0 1127 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 PTGDR2Q9Y5Y4 395 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 UNC13CQ8NB66 2214 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 DMDP11532 3685 aa10.27□□□□□ -0.77
SS18-213ENST00000579640 GOLGA8QA0A0J9YX86 632 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.26□□□□□ -0.77
SS18-213ENST00000579640 ATP6AP2A0A1C7CYW4 349 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 GOLGA8OA6NCC3 632 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 GOLGA8NF8WBI6 632 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 TXNDC9O14530 226 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 LSM1O15116 133 aaKnown RBP10.26□□□□□ -0.77
SS18-213ENST00000579640 RFPL3O75679 317 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 ATP6AP2O75787 350 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 SLC35G6P0C7Q6 338 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 MSL3P1P0C860 447 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 PCSK2P16519 638 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 NELFEP18615 380 aaKnown RBP10.26□□□□□ -0.77
SS18-213ENST00000579640 STXBP1P61764 594 aaKnown RBP10.26□□□□□ -0.77
SS18-213ENST00000579640 CYP4F2P78329 520 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 IRX1P78414 480 aaPredicted RBP10.26□□□□□ -0.77
SS18-213ENST00000579640 HMGCS1Q01581 520 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 RGS1Q08116 209 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 SF3A3Q12874 501 aaKnown RBP eCLIP10.26□□□□□ -0.774e-6■■■■□ 22.2
SS18-213ENST00000579640 LSM12Q3MHD2 195 aaKnown RBP10.26□□□□□ -0.77
SS18-213ENST00000579640 TMEM35AQ53FP2 167 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 SNAP47Q5SQN1 464 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 DEPDC1Q5TB30 811 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 ADNP2Q6IQ32 1131 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 ZNF574Q6ZN55 896 aaPredicted RBP10.26□□□□□ -0.77
SS18-213ENST00000579640 ARHGAP22Q7Z5H3 698 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 VN1R4Q7Z5H5 301 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 SPATA19Q7Z5L4 167 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 ZFAND4Q86XD8 727 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 D2HGDHQ8N465 521 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 SRFBP1Q8NEF9 429 aaKnown RBP10.26□□□□□ -0.77
SS18-213ENST00000579640 NETO1Q8TDF5 533 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 SLC13A3Q8WWT9 602 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 TM4SF19Q96DZ7 209 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 OR52B2Q96RD2 323 aa10.26□□□□□ -0.77
SS18-213ENST00000579640 PHOX2BQ99453 314 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms