RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 GPR26Q8NDV2 337 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 METTL2AQ96IZ6 378 aaKnown RBP10.39□□□□□ -0.75
CCDC40-207ENST00000572253 MRPL9Q9BYD2 267 aaKnown RBP10.39□□□□□ -0.75
CCDC40-207ENST00000572253 SH3BP4Q9P0V3 963 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 PCDHGB6Q9Y5F9 930 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 LYVE1Q9Y5Y7 322 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 HOXA2O43364 376 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 SLC19A1P41440 591 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 CRATP43155 626 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 PRIM2P49643 509 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 CDH12P55289 794 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 ST3GAL4Q11206 333 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 RGNQ15493 299 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 Q6ZPB1 254 aaPredicted RBP10.38□□□□□ -0.75
CCDC40-207ENST00000572253 FAM83FQ8NEG4 500 aaPredicted RBP10.38□□□□□ -0.75
CCDC40-207ENST00000572253 ST13P5Q8NFI4 369 aaPredicted RBP10.38□□□□□ -0.75
CCDC40-207ENST00000572253 OR4A15Q8NGL6 344 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 CLP1Q92989 425 aaKnown RBP10.38□□□□□ -0.75
CCDC40-207ENST00000572253 FCRL1Q96LA6 429 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 CDADC1Q9BWV3 514 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 BBS2Q9BXC9 721 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 ROGDIQ9GZN7 287 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 RNF38Q9H0F5 515 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 ELAC1Q9H777 363 aaKnown RBP10.38□□□□□ -0.75
CCDC40-207ENST00000572253 GPR83Q9NYM4 423 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 EHD3Q9NZN3 535 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 BNIP3LO60238 219 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 SNX4O95219 450 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 ANXA4P09525 319 aaPredicted RBP10.38□□□□□ -0.75
CCDC40-207ENST00000572253 ADORA3P0DMS8 318 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 HSD3B1P14060 373 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 HSD3B2P26439 372 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 CASP3P42574 277 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 RGS6P49758 472 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 SELENOWP63302 87 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 CYP4F2P78329 520 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 PLEKHS1Q5SXH7 462 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 C1QTNF12Q5T7M4 302 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 TSPAN33Q86UF1 283 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 KRT73Q86Y46 540 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 METTL4Q8N3J2 472 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 ATL1Q8WXF7 558 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 WBP2Q969T9 261 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 MTERF1Q99551 399 aaKnown RBP10.38□□□□□ -0.75
CCDC40-207ENST00000572253 RAD9AQ99638 391 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 NXF2Q9GZY0 626 aaKnown RBP10.38□□□□□ -0.75
CCDC40-207ENST00000572253 OR51E2Q9H255 320 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 DYRK4Q9NR20 520 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 RAD18Q9NS91 495 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 LSM7Q9UK45 103 aaKnown RBP10.38□□□□□ -0.75
CCDC40-207ENST00000572253 VWA8A3KMH1 1905 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 GNG14A0A1W2PPG7 69 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 C2orf78A6NCI8 922 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 ZW10O43264 779 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 SMAD6O43541 496 aaKnown RBP10.38□□□□□ -0.75
CCDC40-207ENST00000572253 MPZL2O60487 215 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 SCN2BO60939 215 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 ABCB1P08183 1280 aaPredicted RBP10.38□□□□□ -0.75
CCDC40-207ENST00000572253 RPL17P18621 184 aaKnown RBP10.38□□□□□ -0.75
CCDC40-207ENST00000572253 TIE1P35590 1138 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 HNF4AP41235 474 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 LRIT3Q3SXY7 679 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 GCNT6Q5T4J0 391 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 MFSD4BQ5TF39 518 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 CRTC1Q6UUV9 634 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 TRIM69Q86WT6 500 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 ZNF486Q96H40 463 aaPredicted RBP10.38□□□□□ -0.75
CCDC40-207ENST00000572253 TMEM175Q9BSA9 504 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 GPBP1L1Q9HC44 474 aaPredicted RBP10.38□□□□□ -0.75
CCDC40-207ENST00000572253 WBP11Q9Y2W2 641 aaKnown RBP10.38□□□□□ -0.75
CCDC40-207ENST00000572253 PCDHGA3Q9Y5H0 932 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 KLK4Q9Y5K2 254 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 OR51B4Q9Y5P0 310 aa10.38□□□□□ -0.75
CCDC40-207ENST00000572253 PIKFYVEQ9Y2I7 2098 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 NPIPB15A6NHN6 443 aaPredicted RBP10.37□□□□□ -0.75
CCDC40-207ENST00000572253 AOC2O75106 756 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 KCNK2O95069 426 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 KRT75O95678 551 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 NUDT7P0C024 238 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 CST5P28325 142 aaPredicted RBP10.37□□□□□ -0.75
CCDC40-207ENST00000572253 FLT3LGP49771 235 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 GATMP50440 423 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 SNRPD1P62314 119 aaKnown RBP10.37□□□□□ -0.75
CCDC40-207ENST00000572253 KCNC3Q14003 757 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 MBTPS1Q14703 1052 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 ATP13A5Q4VNC0 1218 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 LRRC66Q68CR7 880 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 SLC7A5P1Q8MH63 180 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 OR52J3Q8NH60 311 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 CLN6Q9NWW5 311 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 ZNF221Q9UK13 617 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 BTBD3Q9Y2F9 522 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 UPK3BL1B0FP48 263 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 UPK3BL2E5RIL1 263 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 ADAM12O43184 909 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 IDH3BO43837 385 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 GALTP07902 379 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 HMGA1P17096 107 aaKnown RBP10.37□□□□□ -0.75
CCDC40-207ENST00000572253 PXNP49023 591 aaPredicted RBP10.37□□□□□ -0.75
CCDC40-207ENST00000572253 C21orf58P58505 322 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms