RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 SERPIND1P05546 499 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 C1GALT1C1LP0DN25 315 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 GMPRP36959 345 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 GDF5P43026 501 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 SCTRP47872 440 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 OR1D4P47884 311 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 ALDH18A1P54886 795 aaKnown RBP12.36□□□□□ -0.43
CLK3-224ENST00000568605 RRADP55042 308 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 VSNL1P62760 191 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 LAPTM5Q13571 262 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 SETDB1Q15047 1291 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 TBR1Q16650 682 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 METTL2BQ6P1Q9 378 aaKnown RBP12.36□□□□□ -0.43
CLK3-224ENST00000568605 WDR93Q6P2C0 686 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 ABHD13Q7L211 337 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 ZCCHC10Q8TBK6 192 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 ACMSDQ8TDX5 336 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 APOBEC4Q8WW27 367 aaKnown RBP12.36□□□□□ -0.43
CLK3-224ENST00000568605 NACC2Q96BF6 587 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 PTCD3Q96EY7 689 aaKnown RBP12.36□□□□□ -0.43
CLK3-224ENST00000568605 MMABQ96EY8 250 aaPredicted RBP12.36□□□□□ -0.43
CLK3-224ENST00000568605 EFCAB11Q9BUY7 163 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 MKKSQ9NPJ1 570 aaPredicted RBP12.36□□□□□ -0.43
CLK3-224ENST00000568605 XPR1Q9UBH6 696 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 G3BP2Q9UN86 482 aaKnown RBP12.36□□□□□ -0.43
CLK3-224ENST00000568605 MAU2Q9Y6X3 613 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 PEX12O00623 359 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 TAPBPO15533 448 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 RFPL1O75677 317 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 KLF7O75840 302 aaPredicted RBP12.35□□□□□ -0.43
CLK3-224ENST00000568605 TUBBP07437 444 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 EPB42P16452 691 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 GCAP28676 217 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 OTX2P32243 289 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 POLE2P56282 527 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 NFKB2Q00653 900 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 IRF8Q02556 426 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 SLBPQ14493 270 aaKnown RBP eCLIP12.35□□□□□ -0.43
CLK3-224ENST00000568605 SSPNQ14714 243 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 NAA30Q147X3 362 aaPredicted RBP12.35□□□□□ -0.43
CLK3-224ENST00000568605 HERC3Q15034 1050 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 RBBP5Q15291 538 aaKnown RBP12.35□□□□□ -0.43
CLK3-224ENST00000568605 NKG7Q16617 165 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 HIST2H2ACQ16777 129 aaPredicted RBP12.35□□□□□ -0.43
CLK3-224ENST00000568605 PFKFB4Q16877 469 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 C18orf21Q32NC0 220 aaPredicted RBP12.35□□□□□ -0.43
CLK3-224ENST00000568605 XKR6Q5GH73 641 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 ATP1A1-AS1Q5TC04 95 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 HIST2H2AA3Q6FI13 130 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 TMEM214Q6NUQ4 689 aaKnown RBP12.35□□□□□ -0.43
CLK3-224ENST00000568605 TMIGD1Q6UXZ0 262 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 TIFABQ6ZNK6 161 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 SLCO4C1Q6ZQN7 724 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 COX15Q7KZN9 410 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 ADAMTS17Q8TE56 1095 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 UBE2E3Q969T4 207 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 MIEF2Q96C03 454 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 TM4SF19Q96DZ7 209 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 MRPL57Q9BQC6 102 aaKnown RBP12.35□□□□□ -0.43
CLK3-224ENST00000568605 YIPF2Q9BWQ6 316 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 MRPL46Q9H2W6 279 aaKnown RBP12.35□□□□□ -0.43
CLK3-224ENST00000568605 EPB41L4BQ9H329 900 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 SYNPO2LQ9H987 977 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 PRM3Q9NNZ6 103 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 TRPC4Q9UBN4 977 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 CTSFQ9UBX1 484 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 TUBD1Q9UJT1 453 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 MAP4K5Q9Y4K4 846 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 SLC22A7Q9Y694 548 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 ATMQ13315 3056 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 PIEZO2Q9H5I5 2752 aa12.35□□□□□ -0.43
CLK3-224ENST00000568605 A0A088AWK7 358 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 A0A0A6YYC8 382 aaPredicted RBP12.34□□□□□ -0.43
CLK3-224ENST00000568605 ANKDD1BA6NHY2 528 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 I3L1I5 382 aaPredicted RBP12.34□□□□□ -0.43
CLK3-224ENST00000568605 MAP2K7O14733 419 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 PCDH17O14917 1159 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 KLK8O60259 260 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 LCMT2O60294 686 aaKnown RBP12.34□□□□□ -0.43
CLK3-224ENST00000568605 CDH16O75309 829 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 STATHP02808 62 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 KRT15P19012 456 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 ZNF10P21506 573 aaPredicted RBP12.34□□□□□ -0.43
CLK3-224ENST00000568605 SERPINB1P30740 379 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 STXBP1P61764 594 aaKnown RBP12.34□□□□□ -0.43
CLK3-224ENST00000568605 PHEXP78562 749 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 TBCCQ15814 346 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 FBXO48Q5FWF7 155 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 TDRPQ86YL5 185 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 APLFQ8IW19 511 aaPredicted RBP12.34□□□□□ -0.43
CLK3-224ENST00000568605 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLK3-224ENST00000568605 PLD6Q8N2A8 252 aaKnown RBP12.34□□□□□ -0.43
CLK3-224ENST00000568605 RIBC1Q8N443 379 aaPredicted RBP12.34□□□□□ -0.43
CLK3-224ENST00000568605 TMEM102Q8N9M5 508 aaPredicted RBP12.34□□□□□ -0.43
CLK3-224ENST00000568605 NT5CQ8TCD5 201 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 STT3BQ8TCJ2 826 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.34□□□□□ -0.43
CLK3-224ENST00000568605 SLC39A7Q92504 469 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 CCT6BQ92526 530 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 ESAMQ96AP7 390 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms