RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 SOX17Q9H6I2 414 aaPredicted RBP12.73□□□□□ -0.37
CLK3-216ENST00000564468 ANKHQ9HCJ1 492 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 ZNF71Q9NQZ8 489 aaPredicted RBP12.73□□□□□ -0.37
CLK3-216ENST00000564468 P4HTMQ9NXG6 502 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 GPRC5BQ9NZH0 403 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 TRPC4Q9UBN4 977 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 CTSFQ9UBX1 484 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 ANAPC2Q9UJX6 822 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 TP53TG5Q9Y2B4 290 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 MAP4K5Q9Y4K4 846 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 SLC22A7Q9Y694 548 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 FLNCQ14315 2725 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 A0A0A6YYC8 382 aaPredicted RBP12.72□□□□□ -0.37
CLK3-216ENST00000564468 SYCE1LA8MT33 242 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 I3L1I5 382 aaPredicted RBP12.72□□□□□ -0.37
CLK3-216ENST00000564468 CLGNO14967 610 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 FOXS1O43638 330 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 STK16O75716 305 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 CEACAM4O75871 244 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 KRT38O76015 456 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 C1GALT1C1LP0DN25 315 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 TFEBP19484 476 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 GSTM2P28161 218 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 TYK2P29597 1187 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 ECHS1P30084 290 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 MSH2P43246 934 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 SLC6A12P48065 614 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 PGDP52209 483 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 REEP5Q00765 189 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 KLC1Q07866 573 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 CDC16Q13042 620 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 CHAF1BQ13112 559 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 HERC3Q15034 1050 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 DCAF10Q5QP82 559 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 CATSPEREQ5SY80 951 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 CPZQ66K79 652 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 TMEM214Q6NUQ4 689 aaKnown RBP12.72□□□□□ -0.37
CLK3-216ENST00000564468 KLC3Q6P597 504 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 PPP1R32Q7Z5V6 425 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 KRT78Q8N1N4 520 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 ARHGEF39Q8N4T4 335 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 PDPRQ8NCN5 879 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 TTLQ8NG68 377 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 RHEBL1Q8TAI7 183 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 SLC44A1Q8WWI5 657 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 TSNARE1Q96NA8 513 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 TRIM55Q9BYV6 548 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 TGIF2Q9GZN2 237 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 PITHD1Q9GZP4 211 aaPredicted RBP12.72□□□□□ -0.37
CLK3-216ENST00000564468 SYNPO2LQ9H987 977 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 ATP13A2Q9NQ11 1180 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 DNAJC11Q9NVH1 559 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 NUDT4Q9NZJ9 180 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 ZFP69BQ9UJL9 534 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 NFU1Q9UMS0 254 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 ZNF451Q9Y4E5 1061 aa12.72□□□□□ -0.37
CLK3-216ENST00000564468 NDUFS4O43181 175 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 SUV39H1O43463 412 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 KERAO60938 352 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 DNAJB5O75953 348 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 C2P06681 752 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 CYC1P08574 325 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 RHOXF2BP0C7M4 288 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 HPDP32754 393 aaPredicted RBP12.71□□□□□ -0.37
CLK3-216ENST00000564468 SCTRP47872 440 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 EMP2P54851 167 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 MEF2AQ02078 507 aaPredicted RBP12.71□□□□□ -0.37
CLK3-216ENST00000564468 KLRB1Q12918 225 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 AIMP2Q13155 320 aaKnown RBP12.71□□□□□ -0.37
CLK3-216ENST00000564468 BMPR2Q13873 1038 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 ACAP2Q15057 778 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 OR4D1Q15615 310 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 LGSNQ5TDP6 509 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 IRAK1BP1Q5VVH5 260 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 ASB18Q6ZVZ8 466 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 TRMT10CQ7L0Y3 403 aaKnown RBP12.71□□□□□ -0.37
CLK3-216ENST00000564468 ISCA2Q86U28 154 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 LURAP1LQ8IV03 231 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 DTWD1Q8N5C7 304 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 EIF1ADQ8N9N8 165 aaKnown RBP12.71□□□□□ -0.37
CLK3-216ENST00000564468 TEX19Q8NA77 164 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 NT5CQ8TCD5 201 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 SEC16BQ96JE7 1060 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 PAFAH2Q99487 392 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 RHOXF2Q9BQY4 288 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 EHD1Q9H4M9 534 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 ALG9Q9H6U8 611 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 SNX15Q9NRS6 342 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 GPR83Q9NYM4 423 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 ZNF180Q9UJW8 692 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 C3orf18Q9UK00 162 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 PTBP2Q9UKA9 531 aaKnown RBP12.71□□□□□ -0.37
CLK3-216ENST00000564468 LRRK2Q5S007 2527 aa12.71□□□□□ -0.37
CLK3-216ENST00000564468 A0A096LPK6 155 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 SUPT3HB4E1H0 165 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 POC1B-GALNT4F8VUJ3 575 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 MAP2K7O14733 419 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 TAPBPO15533 448 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 SUPT3HO75486 399 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 KLHL2O95198 593 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms