RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 CBX6O95503 412 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 SERPINA7P05543 415 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 NPPBP16860 134 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 XCR1P46094 333 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 RPL21P46778 160 aaKnown RBP16.73■□□□□ 0.27
NME3-205ENST00000563854 CCR8P51685 355 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 EFNA3P52797 238 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 AP1S2P56377 157 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 PCOLCEQ15113 449 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 TLR1Q15399 786 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 HIST2H2BCQ6DN03 193 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 LANCL3Q6ZV70 420 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 ZBED8Q8IZ13 594 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 MFSD9Q8NBP5 474 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 OR51Q1Q8NH59 317 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 ATL1Q8WXF7 558 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 FBXL8Q96CD0 374 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 MAGEB10Q96LZ2 347 aaPredicted RBP16.73■□□□□ 0.27
NME3-205ENST00000563854 VN1R1Q9GZP7 353 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 DPH5Q9H2P9 285 aa16.73■□□□□ 0.27
NME3-205ENST00000563854 RP1L1Q8IWN7 2480 aaPredicted RBP16.73■□□□□ 0.27
NME3-205ENST00000563854 DYTNA2CJ06 578 aa16.72■□□□□ 0.27
NME3-205ENST00000563854 OR2W5A6NFC9 320 aa16.72■□□□□ 0.27
NME3-205ENST00000563854 ITGAMP11215 1152 aa16.72■□□□□ 0.27
NME3-205ENST00000563854 TSFMP43897 325 aaKnown RBP16.72■□□□□ 0.27
NME3-205ENST00000563854 ZXDCQ2QGD7 858 aaPredicted RBP16.72■□□□□ 0.27
NME3-205ENST00000563854 CATSPEREQ5SY80 951 aa16.72■□□□□ 0.27
NME3-205ENST00000563854 B3GNTL1Q67FW5 361 aaPredicted RBP16.72■□□□□ 0.27
NME3-205ENST00000563854 OR1N1Q8NGS0 311 aa16.72■□□□□ 0.27
NME3-205ENST00000563854 OR56A3Q8NH54 315 aa16.72■□□□□ 0.27
NME3-205ENST00000563854 GRHL3Q8TE85 626 aa16.72■□□□□ 0.27
NME3-205ENST00000563854 OR4K3Q96R72 315 aa16.72■□□□□ 0.27
NME3-205ENST00000563854 LMF1Q96S06 567 aa16.72■□□□□ 0.27
NME3-205ENST00000563854 EGFL8Q99944 293 aa16.72■□□□□ 0.27
NME3-205ENST00000563854 ZNF700Q9H0M5 742 aa16.72■□□□□ 0.27
NME3-205ENST00000563854 NAALAD2Q9Y3Q0 740 aa16.72■□□□□ 0.27
NME3-205ENST00000563854 UTP20O75691 2785 aaKnown RBP16.72■□□□□ 0.27
NME3-205ENST00000563854 LOC102723996A0A087X1L8 192 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 CDC7O00311 574 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 PCDH17O14917 1159 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 CDC123O75794 336 aaPredicted RBP16.71■□□□□ 0.27
NME3-205ENST00000563854 PIAS1O75925 651 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 ENO2P09104 434 aaPredicted RBP16.71■□□□□ 0.27
NME3-205ENST00000563854 ZNF37AP17032 561 aaPredicted RBP16.71■□□□□ 0.27
NME3-205ENST00000563854 CSHL1Q14406 222 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 ESPL1Q14674 2120 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 TMEM205Q6UW68 189 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 FAM180AQ6UWF9 173 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 SBSNQ6UWP8 590 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 TMEM207Q6UWW9 146 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 FRA10AC1Q70Z53 315 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 ZC3HC1Q86WB0 502 aaKnown RBP16.71■□□□□ 0.27
NME3-205ENST00000563854 PDSS2Q86YH6 399 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 TBC1D19Q8N5T2 526 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 ZNF740Q8NDX6 193 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 SLC5A11Q8WWX8 675 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 PSMF1Q92530 271 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 NEIL2Q969S2 332 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 TM4SF19Q96DZ7 209 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 MOCOSQ96EN8 888 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 PEX11GQ96HA9 241 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.71■□□□□ 0.27
NME3-205ENST00000563854 PLEKHB1Q9UF11 243 aaPredicted RBP16.71■□□□□ 0.27
NME3-205ENST00000563854 C19orf25Q9UFG5 118 aaPredicted RBP16.71■□□□□ 0.27
NME3-205ENST00000563854 DYRK1BQ9Y463 629 aa16.71■□□□□ 0.27
NME3-205ENST00000563854 A0A1W2PQ72 361 aa16.7■□□□□ 0.26
NME3-205ENST00000563854 FANCGO15287 622 aa16.7■□□□□ 0.26
NME3-205ENST00000563854 TP73O15350 636 aa16.7■□□□□ 0.26
NME3-205ENST00000563854 B3GALT4O96024 378 aa16.7■□□□□ 0.26
NME3-205ENST00000563854 SOX11P35716 441 aa16.7■□□□□ 0.26
NME3-205ENST00000563854 TAS2R39P59534 338 aa16.7■□□□□ 0.26
NME3-205ENST00000563854 OLR1P78380 273 aa16.7■□□□□ 0.26
NME3-205ENST00000563854 C2orf54Q08AI8 447 aa16.7■□□□□ 0.26
NME3-205ENST00000563854 CALCOCO2Q13137 446 aa16.7■□□□□ 0.26
NME3-205ENST00000563854 BTBD16Q32M84 506 aa16.7■□□□□ 0.26
NME3-205ENST00000563854 RIPOR1Q6ZS17 1223 aa16.7■□□□□ 0.26
NME3-205ENST00000563854 CPEB2Q7Z5Q1 589 aaKnown RBP16.7■□□□□ 0.26
NME3-205ENST00000563854 TMPRSS11BQ86T26 416 aa16.7■□□□□ 0.26
NME3-205ENST00000563854 NKAPQ8N5F7 415 aaKnown RBP16.7■□□□□ 0.26
NME3-205ENST00000563854 OR5T3Q8NGG3 340 aa16.7■□□□□ 0.26
NME3-205ENST00000563854 PDLIM2Q96JY6 352 aa16.7■□□□□ 0.26
NME3-205ENST00000563854 CYTH2Q99418 400 aa16.7■□□□□ 0.26
NME3-205ENST00000563854 TUBB6Q9BUF5 446 aa16.7■□□□□ 0.26
NME3-205ENST00000563854 UNKQ9C0B0 810 aaKnown RBP16.7■□□□□ 0.26
NME3-205ENST00000563854 SPNS1Q9H2V7 528 aa16.7■□□□□ 0.26
NME3-205ENST00000563854 ERRFI1Q9UJM3 462 aaPredicted RBP16.7■□□□□ 0.26
NME3-205ENST00000563854 USP9YO00507 2555 aaPredicted RBP16.7■□□□□ 0.26
NME3-205ENST00000563854 SCN3AQ9NY46 2000 aa16.69■□□□□ 0.26
NME3-205ENST00000563854 TRBC2A0A5B9 178 aa16.69■□□□□ 0.26
NME3-205ENST00000563854 A8MUI8 341 aa16.69■□□□□ 0.26
NME3-205ENST00000563854 E7ESA3 106 aa16.69■□□□□ 0.26
NME3-205ENST00000563854 NDC80O14777 642 aa16.69■□□□□ 0.26
NME3-205ENST00000563854 ICAM2P13598 275 aa16.69■□□□□ 0.26
NME3-205ENST00000563854 HNF4AP41235 474 aa16.69■□□□□ 0.26
NME3-205ENST00000563854 SLC12A2P55011 1212 aa16.69■□□□□ 0.26
NME3-205ENST00000563854 AP2B1P63010 937 aa16.69■□□□□ 0.26
NME3-205ENST00000563854 ZNF33BQ06732 778 aa16.69■□□□□ 0.26
NME3-205ENST00000563854 RGS1Q08116 209 aa16.69■□□□□ 0.26
NME3-205ENST00000563854 FRG1Q14331 258 aaKnown RBP16.69■□□□□ 0.26
NME3-205ENST00000563854 PPP1R3AQ16821 1122 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms