RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 CMTM7Q96FZ5 175 aa8.83□□□□□ -1
LDLR-210ENST00000559340 FAR2Q96K12 515 aa8.83□□□□□ -1
LDLR-210ENST00000559340 NSUN5Q96P11 429 aaKnown RBP8.83□□□□□ -1
LDLR-210ENST00000559340 OR2A5Q96R48 311 aa8.83□□□□□ -1
LDLR-210ENST00000559340 NDC1Q9BTX1 674 aa8.83□□□□□ -1
LDLR-210ENST00000559340 MECRQ9BV79 373 aa8.83□□□□□ -1
LDLR-210ENST00000559340 FAM60AQ9NP50 221 aa8.83□□□□□ -1
LDLR-210ENST00000559340 MLXIPLQ9NP71 852 aa8.83□□□□□ -1
LDLR-210ENST00000559340 ENAMQ9NRM1 1142 aa8.83□□□□□ -1
LDLR-210ENST00000559340 THAP1Q9NVV9 213 aa8.83□□□□□ -1
LDLR-210ENST00000559340 OCIAD1Q9NX40 245 aa8.83□□□□□ -1
LDLR-210ENST00000559340 SIDT1Q9NXL6 827 aaKnown RBP8.83□□□□□ -1
LDLR-210ENST00000559340 AHSPQ9NZD4 102 aa8.83□□□□□ -1
LDLR-210ENST00000559340 PISDQ9UG56 409 aa8.83□□□□□ -1
LDLR-210ENST00000559340 CDC14AQ9UNH5 594 aa8.83□□□□□ -1
LDLR-210ENST00000559340 SRPK3Q9UPE1 567 aa8.83□□□□□ -1
LDLR-210ENST00000559340 SH2B3Q9UQQ2 575 aa8.83□□□□□ -1
LDLR-210ENST00000559340 RNF11Q9Y3C5 154 aa8.83□□□□□ -1
LDLR-210ENST00000559340 NEUROG3Q9Y4Z2 214 aa8.83□□□□□ -1
LDLR-210ENST00000559340 ASB1Q9Y576 335 aa8.83□□□□□ -1
LDLR-210ENST00000559340 PCDHGA4Q9Y5G9 962 aa8.83□□□□□ -1
LDLR-210ENST00000559340 PCDHGA3Q9Y5H0 932 aa8.83□□□□□ -1
LDLR-210ENST00000559340 AHCTF1Q8WYP5 2266 aa8.83□□□□□ -1
LDLR-210ENST00000559340 CHD8Q9HCK8 2581 aa8.82□□□□□ -1
LDLR-210ENST00000559340 FEZF1A0PJY2 475 aa8.82□□□□□ -1
LDLR-210ENST00000559340 SLCO1B7G3V0H7 640 aa8.82□□□□□ -1
LDLR-210ENST00000559340 FOXE1O00358 373 aaPredicted RBP8.82□□□□□ -1
LDLR-210ENST00000559340 AZIN1O14977 448 aa8.82□□□□□ -1
LDLR-210ENST00000559340 CASC3O15234 703 aaKnown RBP8.82□□□□□ -1
LDLR-210ENST00000559340 LCMT2O60294 686 aaKnown RBP8.82□□□□□ -1
LDLR-210ENST00000559340 ULK1O75385 1050 aa8.82□□□□□ -1
LDLR-210ENST00000559340 OR4F21O95013 312 aa8.82□□□□□ -1
LDLR-210ENST00000559340 EIF2S1P05198 315 aaKnown RBP8.82□□□□□ -1
LDLR-210ENST00000559340 SERPINA6P08185 405 aa8.82□□□□□ -1
LDLR-210ENST00000559340 UROSP10746 265 aa8.82□□□□□ -1
LDLR-210ENST00000559340 TSPAN8P19075 237 aa8.82□□□□□ -1
LDLR-210ENST00000559340 EPORP19235 508 aa8.82□□□□□ -1
LDLR-210ENST00000559340 BCL6P41182 706 aa8.82□□□□□ -1
LDLR-210ENST00000559340 GABRA4P48169 554 aa8.82□□□□□ -1
LDLR-210ENST00000559340 HK2P52789 917 aa8.82□□□□□ -1
LDLR-210ENST00000559340 ARFIP1P53367 373 aa8.82□□□□□ -1
LDLR-210ENST00000559340 YBX1P67809 324 aaKnown RBP8.82□□□□□ -1
LDLR-210ENST00000559340 SH3BP2P78314 561 aa8.82□□□□□ -1
LDLR-210ENST00000559340 GABREP78334 506 aa8.82□□□□□ -1
LDLR-210ENST00000559340 MEF2AQ02078 507 aaPredicted RBP8.82□□□□□ -1
LDLR-210ENST00000559340 CYP4F3Q08477 520 aa8.82□□□□□ -1
LDLR-210ENST00000559340 KCNAB1Q14722 419 aa8.82□□□□□ -1
LDLR-210ENST00000559340 ZRSR2Q15696 482 aaKnown RBP8.82□□□□□ -1
LDLR-210ENST00000559340 GPR19Q15760 415 aa8.82□□□□□ -1
LDLR-210ENST00000559340 MUM1Q2TAK8 710 aa8.82□□□□□ -1
LDLR-210ENST00000559340 TUBB8Q3ZCM7 444 aa8.82□□□□□ -1
LDLR-210ENST00000559340 ARL13AQ5H913 290 aaPredicted RBP8.82□□□□□ -1
LDLR-210ENST00000559340 FRG2Q64ET8 278 aa8.82□□□□□ -1
LDLR-210ENST00000559340 FOXR1Q6PIV2 292 aa8.82□□□□□ -1
LDLR-210ENST00000559340 IGF2-ASQ6U949 168 aa8.82□□□□□ -1
LDLR-210ENST00000559340 ZCCHC23Q6ZST2 131 aa8.82□□□□□ -1
LDLR-210ENST00000559340 ABHD13Q7L211 337 aa8.82□□□□□ -1
LDLR-210ENST00000559340 CUZD1Q86UP6 607 aa8.82□□□□□ -1
LDLR-210ENST00000559340 TMEM126BQ8IUX1 230 aa8.82□□□□□ -1
LDLR-210ENST00000559340 CSNK1A1LQ8N752 337 aa8.82□□□□□ -1
LDLR-210ENST00000559340 GBP7Q8N8V2 638 aaPredicted RBP8.82□□□□□ -1
LDLR-210ENST00000559340 OR7G3Q8NG95 312 aa8.82□□□□□ -1
LDLR-210ENST00000559340 OR52B6Q8NGF0 335 aa8.82□□□□□ -1
LDLR-210ENST00000559340 OR6Y1Q8NGX8 325 aa8.82□□□□□ -1
LDLR-210ENST00000559340 NT5CQ8TCD5 201 aa8.82□□□□□ -1
LDLR-210ENST00000559340 SELENOMQ8WWX9 145 aa8.82□□□□□ -1
LDLR-210ENST00000559340 ZNF75CPQ92670 426 aaPredicted RBP8.82□□□□□ -1
LDLR-210ENST00000559340 ZNF501Q96CX3 271 aaPredicted RBP8.82□□□□□ -1
LDLR-210ENST00000559340 NXPE2Q96DL1 559 aa8.82□□□□□ -1
LDLR-210ENST00000559340 MAGEB18Q96M61 343 aa8.82□□□□□ -1
LDLR-210ENST00000559340 ZNF285Q96NJ3 590 aa8.82□□□□□ -1
LDLR-210ENST00000559340 FRG2BQ96QU4 278 aa8.82□□□□□ -1
LDLR-210ENST00000559340 SERPINI1Q99574 410 aa8.82□□□□□ -1
LDLR-210ENST00000559340 CCT7Q99832 543 aa8.82□□□□□ -1
LDLR-210ENST00000559340 ROGDIQ9GZN7 287 aa8.82□□□□□ -1
LDLR-210ENST00000559340 BRF2Q9HAW0 419 aa8.82□□□□□ -1
LDLR-210ENST00000559340 CLK4Q9HAZ1 481 aaKnown RBP8.82□□□□□ -1
LDLR-210ENST00000559340 TXLNGQ9NUQ3 528 aa8.82□□□□□ -1
LDLR-210ENST00000559340 PPT2Q9UMR5 302 aa8.82□□□□□ -1
LDLR-210ENST00000559340 SATB2Q9UPW6 733 aa8.82□□□□□ -1
LDLR-210ENST00000559340 RAP2CQ9Y3L5 183 aa8.82□□□□□ -1
LDLR-210ENST00000559340 TRAF6Q9Y4K3 522 aa8.82□□□□□ -1
LDLR-210ENST00000559340 PCDHB3Q9Y5E6 796 aa8.82□□□□□ -1
LDLR-210ENST00000559340 AK5Q9Y6K8 562 aa8.82□□□□□ -1
LDLR-210ENST00000559340 LOC105369274A0A096LPK9 316 aa8.81□□□□□ -1
LDLR-210ENST00000559340 LOC102723532A0A0G2JNH3 316 aa8.81□□□□□ -1
LDLR-210ENST00000559340 SERTM1A2A2V5 107 aa8.81□□□□□ -1
LDLR-210ENST00000559340 HYKKA2RU49 373 aa8.81□□□□□ -1
LDLR-210ENST00000559340 FITM1A5D6W6 292 aa8.81□□□□□ -1
LDLR-210ENST00000559340 FAM149AA5PLN7 773 aa8.81□□□□□ -1
LDLR-210ENST00000559340 TMEM8BA6NDV4 472 aa8.81□□□□□ -1
LDLR-210ENST00000559340 SLC28A1O00337 649 aa8.81□□□□□ -1
LDLR-210ENST00000559340 NVLO15381 856 aaKnown RBP8.81□□□□□ -1
LDLR-210ENST00000559340 HYAL3O43820 417 aaPredicted RBP8.81□□□□□ -1
LDLR-210ENST00000559340 PRAMEF10O60809 474 aa8.81□□□□□ -1
LDLR-210ENST00000559340 SCRG1O75711 98 aa8.81□□□□□ -1
LDLR-210ENST00000559340 TNFSF15O95150 251 aa8.81□□□□□ -1
LDLR-210ENST00000559340 KLK3P07288 261 aaPredicted RBP8.81□□□□□ -1
LDLR-210ENST00000559340 CAPN1P07384 714 aa8.81□□□□□ -1
LDLR-210ENST00000559340 CD63P08962 238 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms