RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 TEFQ10587 303 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 ABRQ12979 859 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 GAGE5Q13069 117 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 GAGE6Q13070 117 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 GK2Q14410 553 aaPredicted RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 PDK1Q15118 436 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 MAPK11Q15759 364 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 ACKR1Q16570 336 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 ZNF718Q3SXZ3 478 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 KRT71Q3SY84 523 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 ZNF789Q5FWF6 425 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 SLC35D3Q5M8T2 416 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 LRRC38Q5VT99 294 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 ARHGEF16Q5VV41 709 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 FUT10Q6P4F1 479 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 SPSB3Q6PJ21 355 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 TMEM207Q6UWW9 146 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 RBMS3Q6XE24 437 aaKnown RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 TOM1L2Q6ZVM7 507 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 BTN2A1Q7KYR7 527 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 TRPT1Q86TN4 253 aaKnown RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 NFE4Q86UQ8 179 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 ZNF410Q86VK4 478 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 TMEM126BQ8IUX1 230 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 C4orf19Q8IY42 314 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 KIRREL3Q8IZU9 778 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 STPG4Q8N801 248 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 RTL3Q8N8U3 475 aaKnown RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 SLC37A3Q8NCC5 494 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 OR4C15Q8NGM1 316 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 OR13C3Q8NGS6 347 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 OR2T11Q8NH01 316 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 OR4A16Q8NH70 328 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 CKAP2Q8WWK9 683 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 RSPH1Q8WYR4 309 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 PRCCQ92733 491 aaPredicted RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 SCRN2Q96FV2 425 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 THOC3Q96J01 351 aaKnown RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 PRAC1Q96KF2 57 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 LMLNQ96KR4 655 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 LYZL4Q96KX0 146 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 ZNF560Q96MR9 790 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 RUNDC3BQ96NL0 473 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 TSSK2Q96PF2 358 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 GAL3ST4Q96RP7 486 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 PRMT1Q99873 361 aaKnown RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 DDX50Q9BQ39 737 aaKnown RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 NTMT1Q9BV86 223 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 XPO4Q9C0E2 1151 aaKnown RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 SDCBP2Q9H190 292 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 ABCG8Q9H221 673 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 CARD9Q9H257 536 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 TNMDQ9H2S6 317 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 EGLN3Q9H6Z9 239 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 SYTL2Q9HCH5 934 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 STAU2Q9NUL3 570 aaKnown RBP eCLIP1.47□□□□□ -2.17
USP3-209ENST00000558925 ANO10Q9NW15 660 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 NINJ2Q9NZG7 142 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 SPASTQ9UBP0 616 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 TRMT6Q9UJA5 497 aaKnown RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 CHKBQ9Y259 395 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 ITM2BQ9Y287 266 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 NCKAP1Q9Y2A7 1128 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 COLEC10Q9Y6Z7 277 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 TCF20Q9UGU0 1960 aaKnown RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 NOTCH2Q04721 2471 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 PFASO15067 1338 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 FER1L5A0AVI2 2057 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 IGHV4-61A0A0C4DH41 118 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 C2orf92A0A1B0GVN3 265 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 MAGEB16A2A368 324 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 ZNF732B4DXR9 585 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 PRSS44E7EML9 344 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 NPIPA3F8WFD2 350 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 CACNB4O00305 520 aaPredicted RBP1.46□□□□□ -2.18
USP3-209ENST00000558925 ZNF195O14628 629 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 PSMD3O43242 534 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 LMX1BO60663 402 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 SEC22BO75396 215 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 LRCH4O75427 683 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 GMNNO75496 209 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 TRMUO75648 421 aaKnown RBP1.46□□□□□ -2.18
USP3-209ENST00000558925 B3GALNT1O75752 331 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 DFFBO76075 338 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 LETM1O95202 739 aaPredicted RBP1.46□□□□□ -2.18
USP3-209ENST00000558925 NADKO95544 446 aaPredicted RBP1.46□□□□□ -2.18
USP3-209ENST00000558925 PTBP3O95758 552 aaKnown RBP1.46□□□□□ -2.18
USP3-209ENST00000558925 TGFAP01135 160 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 IGHV4-59P01825 116 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 ATP1A1P05023 1023 aaKnown RBP1.46□□□□□ -2.18
USP3-209ENST00000558925 ZCCHC18P0CG32 403 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 T-ENOLP0DO92 83 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 ODC1P11926 461 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 SKILP12757 684 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 AHCYP23526 432 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 RPA1P27694 616 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 RBMS1P29558 406 aaKnown RBP1.46□□□□□ -2.18
USP3-209ENST00000558925 OR1D2P34982 312 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 MAP2K2P36507 400 aa1.46□□□□□ -2.18
USP3-209ENST00000558925 PITPNBP48739 271 aa1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms