RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 MRPS2Q9Y399 296 aaKnown RBP13.66□□□□□ -0.22
USP3-205ENST00000557884 C9J4A7 227 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 E2F3O00716 465 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 TXNDC9O14530 226 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 TERTO14746 1132 aaKnown RBP13.65□□□□□ -0.22
USP3-205ENST00000557884 PLIN3O60664 434 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 PROCP04070 461 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 SLC35G6P0C7Q6 338 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 TSPAN8P19075 237 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 ATP5F1P24539 256 aaPredicted RBP13.65□□□□□ -0.22
USP3-205ENST00000557884 CXCR2P25025 360 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 ARL1P40616 181 aaPredicted RBP13.65□□□□□ -0.22
USP3-205ENST00000557884 TMPRSS3P57727 454 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 FOXL2P58012 376 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 CXADRP78310 365 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 ARHGAP40Q5TG30 622 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 ADNP2Q6IQ32 1131 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 ENDOVQ8N8Q3 282 aaKnown RBP13.65□□□□□ -0.22
USP3-205ENST00000557884 CCDC63Q8NA47 563 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 MYRIPQ8NFW9 859 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 CCT6BQ92526 530 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 TM4SF19Q96DZ7 209 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 PTCD3Q96EY7 689 aaKnown RBP13.65□□□□□ -0.22
USP3-205ENST00000557884 APOPT1Q96IL0 206 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 SARGQ9BW04 601 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 EHD1Q9H4M9 534 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 NOL11Q9H8H0 719 aaKnown RBP13.65□□□□□ -0.22
USP3-205ENST00000557884 IPPKQ9H8X2 491 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 ACTR8Q9H981 624 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 SLC22A11Q9NSA0 550 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 ZFP69BQ9UJL9 534 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 PCTPQ9UKL6 214 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 SSUH2Q9Y2M2 353 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 ANKRD12Q6UB98 2062 aa13.65□□□□□ -0.22
USP3-205ENST00000557884 A0A0A6YYC8 382 aaPredicted RBP13.64□□□□□ -0.23
USP3-205ENST00000557884 C21orf140B9A014 251 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 I3L1I5 382 aaPredicted RBP13.64□□□□□ -0.23
USP3-205ENST00000557884 CAPN1P07384 714 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 RPS17P08708 135 aaKnown RBP13.64□□□□□ -0.23
USP3-205ENST00000557884 MYL2P10916 166 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 PCNAP12004 261 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 CREB1P16220 341 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 AHRP35869 848 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 HNF4AP41235 474 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 PIK3CGP48736 1102 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 UCNP55089 124 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 RPS15P62841 145 aaKnown RBP13.64□□□□□ -0.23
USP3-205ENST00000557884 RGS1Q08116 209 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 NCF4Q15080 339 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 TBCCQ15814 346 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 RBBP7Q16576 425 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 NDUFA9Q16795 377 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 COL28A1Q2UY09 1125 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 PAGE2BQ5JRK9 111 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 TMEM214Q6NUQ4 689 aaKnown RBP13.64□□□□□ -0.23
USP3-205ENST00000557884 LRIG3Q6UXM1 1119 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 ZNF517Q6ZMY9 492 aaPredicted RBP13.64□□□□□ -0.23
USP3-205ENST00000557884 COX15Q7KZN9 410 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 PRSS41Q7RTY9 318 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 ARHGEF39Q8N4T4 335 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 BANPQ8N9N5 519 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 OR52B6Q8NGF0 335 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 STARD8Q92502 1023 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 ATP6V1E2Q96A05 226 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 COL26A1Q96A83 441 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 WDR34Q96EX3 536 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 CDK15Q96Q40 435 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 TMEM237Q96Q45 408 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 SMC6Q96SB8 1091 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 DPH2Q9BQC3 489 aaPredicted RBP13.64□□□□□ -0.23
USP3-205ENST00000557884 EFCAB11Q9BUY7 163 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 DRC3Q9H069 523 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 IQCGQ9H095 443 aaKnown RBP13.64□□□□□ -0.23
USP3-205ENST00000557884 ACTL8Q9H568 366 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 SEMA4BQ9NPR2 832 aaPredicted RBP13.64□□□□□ -0.23
USP3-205ENST00000557884 GPN3Q9UHW5 284 aaPredicted RBP13.64□□□□□ -0.23
USP3-205ENST00000557884 GRID1Q9ULK0 1009 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 ZNF490Q9ULM2 529 aaPredicted RBP13.64□□□□□ -0.23
USP3-205ENST00000557884 NBEAQ8NFP9 2946 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 SPTBP11277 2137 aa13.64□□□□□ -0.23
USP3-205ENST00000557884 G3V2L1 256 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 OR7A17O14581 309 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 FFAR3O14843 346 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 NKX2-8O15522 239 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 GPR42O15529 346 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 FOXS1O43638 330 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 WFS1O76024 890 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 B3GALT4O96024 378 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 PRKAR1AP10644 381 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 IL1RNP18510 177 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 FBLP22087 321 aaKnown RBP13.63□□□□□ -0.23
USP3-205ENST00000557884 CASP2P42575 452 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 CCNG1P51959 295 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 PRKAA2P54646 552 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 EMP3P54852 163 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 CDH13P55290 713 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 HERVK_113P63132 956 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 LAPTM5Q13571 262 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 PWP1Q13610 501 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 HIST2H2ACQ16777 129 aaPredicted RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms