RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 CMTM6Q9NX76 183 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 FAM32AQ9Y421 112 aaKnown RBP12.19□□□□□ -0.46
SHMT2-229ENST00000557348 OR1A2Q9Y585 309 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 GPC6Q9Y625 555 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-229ENST00000557348 CHD7Q9P2D1 2997 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 LRRK1Q38SD2 2015 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 COL4A2P08572 1712 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 SDC1P18827 310 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 CD22P20273 847 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 PSMA4P25789 261 aaKnown RBP12.18□□□□□ -0.46
SHMT2-229ENST00000557348 NDUFS1P28331 727 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 NUDT1P36639 197 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 HPCAL1P37235 193 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 TRPC1P48995 793 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 TMED10P49755 219 aaKnown RBP12.18□□□□□ -0.46
SHMT2-229ENST00000557348 GSK3BP49841 420 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 LIPEQ05469 1076 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 FGL2Q14314 439 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 CAPRIN1Q14444 709 aaKnown RBP12.18□□□□□ -0.46
SHMT2-229ENST00000557348 SLBPQ14493 270 aaKnown RBP eCLIP12.18□□□□□ -0.46
SHMT2-229ENST00000557348 FAM219BQ5XKK7 198 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 GALNT18Q6P9A2 607 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 SLC2A7Q6PXP3 512 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 SUSD1Q6UWL2 747 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 DLEU7Q6UYE1 221 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 ZBTB49Q6ZSB9 765 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 C17orf64Q86WR6 236 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 TMEM132CQ8N3T6 1108 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 DNAJB14Q8TBM8 379 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 MRGPRX1Q96LB2 322 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 BTBD1Q9H0C5 482 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 NT5DC2Q9H857 520 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 COQ10BQ9H8M1 238 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 GPN2Q9H9Y4 310 aaPredicted RBP12.18□□□□□ -0.46
SHMT2-229ENST00000557348 POLMQ9NP87 494 aaPredicted RBP12.18□□□□□ -0.46
SHMT2-229ENST00000557348 SLC2A4RGQ9NR83 387 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 FAM120CQ9NX05 1096 aaKnown RBP12.18□□□□□ -0.46
SHMT2-229ENST00000557348 PACSIN3Q9UKS6 424 aa12.18□□□□□ -0.46
SHMT2-229ENST00000557348 A0A096LPI6 279 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 PIPSLA2A3N6 862 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 C7orf72A4D263 438 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 C9JVG2 144 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 TNFRSF10CO14798 259 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 MBTPS2O43462 519 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 SULT1C4O75897 302 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 APBB3O95704 486 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 PCNAP12004 261 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 COL9A1P20849 921 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 IL10P22301 178 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 GSTM2P28161 218 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 AKT2P31751 481 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 KIR3DL1P43629 444 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 CLCNKAP51800 687 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 YPEL5P62699 121 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 MTAPQ13126 283 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 PYCR3Q53H96 274 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 SPANXN4Q5MJ08 99 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 LRIF1Q5T3J3 769 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 ANXA8L1Q5VT79 327 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 Q7L0L9 218 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 CHST15Q7LFX5 561 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-229ENST00000557348 ERMP1Q7Z2K6 904 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 CLVS1Q8IUQ0 354 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-229ENST00000557348 RIMKLAQ8IXN7 391 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 KIAA2013Q8IYS2 634 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 SYNPOQ8N3V7 929 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 GALNT4Q8N4A0 578 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 VPS37AQ8NEZ2 397 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 OR8J2Q8NGG1 315 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 OR5AR1Q8NGP9 310 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 HUS1BQ8NHY5 278 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 FAM3CQ92520 227 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 GTF2H4Q92759 462 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 C11orf24Q96F05 449 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-229ENST00000557348 APIPQ96GX9 242 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 CCDC115Q96NT0 180 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 HHIPQ96QV1 700 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 MTERF1Q99551 399 aaKnown RBP12.17□□□□□ -0.46
SHMT2-229ENST00000557348 AIF1LQ9BQI0 150 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 PSD2Q9BQI7 771 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 PAIP1Q9H074 479 aaKnown RBP12.17□□□□□ -0.46
SHMT2-229ENST00000557348 CXorf21Q9HAI6 301 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 WASH6PQ9NQA3 447 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 AHSPQ9NZD4 102 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 SLC23A2Q9UGH3 650 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 LIMD1Q9UGP4 676 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 ERGIC3Q9Y282 383 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 DLGAP4Q9Y2H0 992 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 WBP11Q9Y2W2 641 aaKnown RBP12.17□□□□□ -0.46
SHMT2-229ENST00000557348 PCDHB3Q9Y5E6 796 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 LAMA3Q16787 3333 aa12.17□□□□□ -0.46
SHMT2-229ENST00000557348 SZT2Q5T011 3432 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 PRR23AA6NEV1 266 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 ANTXRLA6NF34 631 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 PRR19A6NJB7 356 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 ARPC2O15144 300 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 AKAP10O43572 662 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 CNOT3O75175 753 aaKnown RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 SEMA3DO95025 777 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 CEACAM5P06731 702 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms