RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 WHRNQ9P202 907 aa9.52□□□□□ -0.89
SCFD1-220ENST00000556486 IMPACTQ9P2X3 320 aa9.52□□□□□ -0.89
SCFD1-220ENST00000556486 SLC2A6Q9UGQ3 507 aa9.52□□□□□ -0.89
SCFD1-220ENST00000556486 TCAF1Q9Y4C2 921 aa9.52□□□□□ -0.89
SCFD1-220ENST00000556486 TNPO3Q9Y5L0 923 aaKnown RBP9.52□□□□□ -0.89
SCFD1-220ENST00000556486 MRFAP1Q9Y605 127 aa9.52□□□□□ -0.89
SCFD1-220ENST00000556486 MAU2Q9Y6X3 613 aa9.52□□□□□ -0.89
SCFD1-220ENST00000556486 SPG11Q96JI7 2443 aa9.52□□□□□ -0.89
SCFD1-220ENST00000556486 M0R082 166 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 CTSVO60911 334 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 PHF2O75151 1096 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 PTMAP06454 111 aaKnown RBP9.51□□□□□ -0.89
SCFD1-220ENST00000556486 ERGP11308 486 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 CD99P14209 185 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 RPS3P23396 243 aaKnown RBP eCLIP9.51□□□□□ -0.89
SCFD1-220ENST00000556486 GNALP38405 381 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 GRIA1P42261 906 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 GRIA3P42263 894 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 OR1D4P47884 311 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 CARSP49589 748 aaKnown RBP9.51□□□□□ -0.89
SCFD1-220ENST00000556486 ZNF75DP51815 510 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 NEK2P51955 445 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 ADARP55265 1226 aaKnown RBP9.51□□□□□ -0.89
SCFD1-220ENST00000556486 PRAMEP78395 509 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 KIF5AQ12840 1032 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 SLBPQ14493 270 aaKnown RBP eCLIP9.51□□□□□ -0.89
SCFD1-220ENST00000556486 GBX1Q14549 363 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 NAA25Q14CX7 972 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 SF1Q15637 639 aaKnown RBP9.51□□□□□ -0.89
SCFD1-220ENST00000556486 FASTKD1Q53R41 847 aaKnown RBP9.51□□□□□ -0.89
SCFD1-220ENST00000556486 PRMT9Q6P2P2 845 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 RPTNQ6XPR3 784 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 C3P1Q6ZMU1 363 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 MEX3BQ6ZN04 569 aaKnown RBP9.51□□□□□ -0.89
SCFD1-220ENST00000556486 LHFPL2Q6ZUX7 228 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 RNF44Q7L0R7 432 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 FGD2Q7Z6J4 655 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 TMEM139Q8IV31 216 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 KCT2Q8NC54 265 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 ACRBPQ8NEB7 543 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 OR2A1Q8NGT9 310 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 ZNF417Q8TAU3 575 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 LKAAEAR1Q8TD35 194 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 BRIX1Q8TDN6 353 aaKnown RBP9.51□□□□□ -0.89
SCFD1-220ENST00000556486 ATG4AQ8WYN0 398 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 MVB12AQ96EY5 273 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 PANX3Q96QZ0 392 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 LMF1Q96S06 567 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 ZNF587Q96SQ5 575 aaPredicted RBP9.51□□□□□ -0.89
SCFD1-220ENST00000556486 SELENOSQ9BQE4 189 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 GSX1Q9H4S2 264 aaPredicted RBP9.51□□□□□ -0.89
SCFD1-220ENST00000556486 MCCC2Q9HCC0 563 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 EIF2B3Q9NR50 452 aaKnown RBP9.51□□□□□ -0.89
SCFD1-220ENST00000556486 TREX1Q9NSU2 369 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 CATSPERZQ9NTU4 200 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 CIDEBQ9UHD4 219 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 PACSIN2Q9UNF0 486 aaPredicted RBP9.51□□□□□ -0.89
SCFD1-220ENST00000556486 CPAMD8Q8IZJ3 1885 aa9.51□□□□□ -0.89
SCFD1-220ENST00000556486 DYTNA2CJ06 578 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 OR2A25A4D2G3 310 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 IQCF5A8MTL0 148 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 FAM227AF5H4B4 570 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 SLC19A2O60779 497 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 C1orf105O95561 183 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 SCGB1D2O95969 90 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 HPP00738 406 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 EPXP11678 715 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 CD247P20963 164 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 FDXRP22570 491 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 ATP5DP30049 168 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 TNFSF10P50591 281 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 CSNK1G2P78368 415 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 RELAQ04206 551 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 EEF1A2Q05639 463 aaKnown RBP9.5□□□□□ -0.89
SCFD1-220ENST00000556486 TMED2Q15363 201 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 INAQ16352 499 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 PCID2Q5JVF3 399 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 ARMC3Q5W041 872 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 ATG9BQ674R7 924 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 TTC23LQ6PF05 361 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 DRICH1Q6PGQ1 229 aaPredicted RBP9.5□□□□□ -0.89
SCFD1-220ENST00000556486 XKRXQ6PP77 449 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 LYPD4Q6UWN0 246 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 PPP1R21Q6ZMI0 780 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 KIAA1328Q86T90 577 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 TAX1BP1Q86VP1 789 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 C2orf73Q8N5S3 287 aaPredicted RBP9.5□□□□□ -0.89
SCFD1-220ENST00000556486 RNF10Q8N5U6 811 aaKnown RBP9.5□□□□□ -0.89
SCFD1-220ENST00000556486 TTC29Q8NA56 475 aaPredicted RBP9.5□□□□□ -0.89
SCFD1-220ENST00000556486 OR2L3Q8NG85 312 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 RCC1LQ96I51 464 aaKnown RBP9.5□□□□□ -0.89
SCFD1-220ENST00000556486 IL17FQ96PD4 163 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 IL22Q9GZX6 179 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 SPATA7Q9P0W8 599 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.5□□□□□ -0.89
SCFD1-220ENST00000556486 PAK5Q9P286 719 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 MARCH4Q9P2E8 410 aaPredicted RBP9.5□□□□□ -0.89
SCFD1-220ENST00000556486 STOX2Q9P2F5 926 aaPredicted RBP9.5□□□□□ -0.89
SCFD1-220ENST00000556486 GNPTGQ9UJJ9 305 aa9.5□□□□□ -0.89
SCFD1-220ENST00000556486 SLC39A10Q9ULF5 831 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms