RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 PCDHGA10Q9Y5H3 936 aa11.21□□□□□ -0.61
VRK1-204ENST00000555351 KCNE2Q9Y6J6 123 aa11.21□□□□□ -0.61
VRK1-204ENST00000555351 TCRBV9S1A1TA0A576 114 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 FEZF1A0PJY2 475 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 URADA6NGE7 173 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 FAM159BA6NKW6 160 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 CDK2AP1O14519 115 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 PRR35P0CG20 571 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 C8orf89P0DMQ9 161 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 SOX11P35716 441 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 GP5P40197 560 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 SCTRP47872 440 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 RGS1Q08116 209 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 NAB1Q13506 487 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 TLR1Q15399 786 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 RPUSD3Q6P087 351 aaKnown RBP11.2□□□□□ -0.62
VRK1-204ENST00000555351 C3orf62Q6ZUJ4 267 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 THOC6Q86W42 341 aaKnown RBP11.2□□□□□ -0.62
VRK1-204ENST00000555351 CEP97Q8IW35 865 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 PARP9Q8IXQ6 854 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 PRSS58Q8IYP2 241 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 TCAIMQ8N3R3 496 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 TRPV3Q8NET8 790 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 OR51Q1Q8NH59 317 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 PSMF1Q92530 271 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 NEIL2Q969S2 332 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 ALKBH8Q96BT7 664 aaKnown RBP11.2□□□□□ -0.62
VRK1-204ENST00000555351 PYCR2Q96C36 320 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 SNRNP40Q96DI7 357 aaKnown RBP11.2□□□□□ -0.62
VRK1-204ENST00000555351 IMMP1LQ96LU5 166 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 CYTH2Q99418 400 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 GPR22Q99680 433 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 RBBP8Q99708 897 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 AIF1LQ9BQI0 150 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 RNF32Q9H0A6 362 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 DPH5Q9H2P9 285 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 ZBTB20Q9HC78 741 aaPredicted RBP11.2□□□□□ -0.62
VRK1-204ENST00000555351 GPAMQ9HCL2 828 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 SAYSD1Q9NPB0 183 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 AGPAT4Q9NRZ5 378 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 CTNNAL1Q9UBT7 734 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 MKL2Q9ULH7 1088 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 MRPS2Q9Y399 296 aaKnown RBP11.2□□□□□ -0.62
VRK1-204ENST00000555351 DYRK1BQ9Y463 629 aa11.2□□□□□ -0.62
VRK1-204ENST00000555351 DOCK10Q96BY6 2186 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 SHANK1Q9Y566 2161 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 CCDC189A1A4V9 331 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 MASP2O00187 686 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 CDC7O00311 574 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 OR1F1O43749 312 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 GALR3O60755 368 aaPredicted RBP11.19□□□□□ -0.62
VRK1-204ENST00000555351 GUCA1CO95843 209 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 C1QAP02745 245 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 ALOX12P18054 663 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 GNAZP19086 355 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 SAT1P21673 171 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 SSTR1P30872 391 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 GGT5P36269 586 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 SLC6A12P48065 614 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 ATP6V0D1P61421 351 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 REEP5Q00765 189 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 CKAP4Q07065 602 aaKnown RBP11.19□□□□□ -0.62
VRK1-204ENST00000555351 SRSF1Q07955 248 aaKnown RBP eCLIP11.19□□□□□ -0.62
VRK1-204ENST00000555351 ZNF169Q14929 603 aaPredicted RBP11.19□□□□□ -0.62
VRK1-204ENST00000555351 PCOLCEQ15113 449 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 ZKSCAN8Q15776 578 aaPredicted RBP11.19□□□□□ -0.62
VRK1-204ENST00000555351 INAQ16352 499 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 GRTP1Q5TC63 336 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 PLAG1Q6DJT9 500 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 NXPE4Q6UWF7 544 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 SYT10Q6XYQ8 523 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 ABHD13Q7L211 337 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 CCDC91Q7Z6B0 441 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 CUZD1Q86UP6 607 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 KCT2Q8NC54 265 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 PLPP5Q8NEB5 264 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 TTLQ8NG68 377 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 DNAJB14Q8TBM8 379 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 HAS2Q92819 552 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 C8orf44Q96CB5 159 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 RHBDF1Q96CC6 855 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 UBXN10Q96LJ8 280 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 VN1R1Q9GZP7 353 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 EHD1Q9H4M9 534 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 CNOT10Q9H9A5 744 aaKnown RBP11.19□□□□□ -0.62
VRK1-204ENST00000555351 SMYD2Q9NRG4 433 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 GPRC5BQ9NZH0 403 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 COPG2Q9UBF2 871 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 IKZF3Q9UKT9 509 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 NAALAD2Q9Y3Q0 740 aa11.19□□□□□ -0.62
VRK1-204ENST00000555351 COPG1Q9Y678 874 aaKnown RBP11.19□□□□□ -0.62
VRK1-204ENST00000555351 NPEPPSL1A6NEC2 478 aa11.18□□□□□ -0.62
VRK1-204ENST00000555351 TCP11X1B4DZS4 312 aa11.18□□□□□ -0.62
VRK1-204ENST00000555351 NDUFS4O43181 175 aa11.18□□□□□ -0.62
VRK1-204ENST00000555351 WFS1O76024 890 aa11.18□□□□□ -0.62
VRK1-204ENST00000555351 KLHL18O94889 574 aa11.18□□□□□ -0.62
VRK1-204ENST00000555351 CBX6O95503 412 aa11.18□□□□□ -0.62
VRK1-204ENST00000555351 SERPINA6P08185 405 aa11.18□□□□□ -0.62
VRK1-204ENST00000555351 MYBL2P10244 700 aa11.18□□□□□ -0.62
VRK1-204ENST00000555351 STMN1P16949 149 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms