RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 BCAT2O15382 392 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-216ENST00000552909 ZW10O43264 779 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 SPINT1O43278 529 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 TMCC2O75069 709 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 MTRF1O75570 445 aaKnown RBP7.41□□□□□ -1.22
LIMA1-216ENST00000552909 SERPINF2P08697 491 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 ADRB3P13945 408 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 NCK1P16333 377 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 MAGP20916 626 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 ITGB7P26010 798 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 CD27P26842 260 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 NUDT1P36639 197 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 CD86P42081 329 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 MAPK8P45983 427 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 GEMP55040 296 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 DNAJB13P59910 316 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 EMX1Q04741 257 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-216ENST00000552909 ZNF235Q14590 738 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 PCSK7Q16549 785 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 CTU2Q2VPK5 515 aaKnown RBP7.41□□□□□ -1.22
LIMA1-216ENST00000552909 VPS26BQ4G0F5 336 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 ZNF805Q5CZA5 627 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 TSTD2Q5T7W7 516 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 ERAP2Q6P179 960 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 GDPD4Q6W3E5 623 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 TMEM135Q86UB9 458 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 STK32CQ86UX6 486 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 IFNEQ86WN2 208 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 ZSWIM9Q86XI8 627 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 CENPLQ8N0S6 344 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-216ENST00000552909 METTL4Q8N3J2 472 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 CELF2-AS1Q8N7Q2 184 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 FAM83FQ8NEG4 500 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-216ENST00000552909 IPMKQ8NFU5 416 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 YIPF6Q96EC8 236 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 RNF145Q96MT1 663 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 SLC6A18Q96N87 628 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 ZNF599Q96NL3 588 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 VPS35Q96QK1 796 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 SEMA3CQ99985 751 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 EDEM2Q9BV94 578 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 NUSAP1Q9BXS6 441 aaKnown RBP7.41□□□□□ -1.22
LIMA1-216ENST00000552909 ZNF717Q9BY31 904 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-216ENST00000552909 HDAC8Q9BY41 377 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 MMP27Q9H306 513 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 ALG2Q9H553 416 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 TM9SF3Q9HD45 589 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 RPRD1BQ9NQG5 326 aaKnown RBP7.41□□□□□ -1.22
LIMA1-216ENST00000552909 DYRK4Q9NR20 520 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 IARS2Q9NSE4 1012 aaKnown RBP7.41□□□□□ -1.22
LIMA1-216ENST00000552909 FAM118AQ9NWS6 357 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 BFARQ9NZS9 450 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 OSGIN1Q9UJX0 560 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 FBXO5Q9UKT4 447 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 SLC6A14Q9UN76 642 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 ZFR2Q9UPR6 939 aaKnown RBP7.41□□□□□ -1.22
LIMA1-216ENST00000552909 CA5BQ9Y2D0 317 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 ACOT9Q9Y305 439 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 PCDHGB1Q9Y5G3 927 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 A0A1B0GVT2 93 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 CCDC154A6NI56 674 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 AGAP5A6NIR3 686 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 C4orf47A7E2U8 309 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 UBXN8O00124 270 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 FXYD1O00168 92 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 HAT1O14929 419 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 POLR1CO15160 346 aaPredicted RBP7.4□□□□□ -1.22
LIMA1-216ENST00000552909 SLC31A1O15431 190 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 LATO43561 262 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 IGSF6O95976 241 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 WNT1P04628 370 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 DDX5P17844 614 aaKnown RBP7.4□□□□□ -1.22
LIMA1-216ENST00000552909 ALOX12P18054 663 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 POLR2CP19387 275 aaPredicted RBP7.4□□□□□ -1.22
LIMA1-216ENST00000552909 AGXTP21549 392 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 GPX3P22352 226 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 DDOSTP39656 456 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 HTR3AP46098 478 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 GSK3BP49841 420 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 WNT3AP56704 352 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 SEMG2Q02383 582 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 CD47Q08722 323 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 HSPA14Q0VDF9 509 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 IHHQ14623 411 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 TYSND1Q2T9J0 566 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 ZNF404Q494X3 552 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 PYCR3Q53H96 274 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 PRAMEF14Q5SWL7 426 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 CERCAMQ5T4B2 595 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 STPG1Q5TH74 334 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 NAPEPLDQ6IQ20 393 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 PNCKQ6P2M8 343 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 IDO2Q6ZQW0 420 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 GDPD3Q7L5L3 318 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 CUZD1Q86UP6 607 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 HORMAD1Q86X24 394 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 PTRH1Q86Y79 214 aaKnown RBP7.4□□□□□ -1.22
LIMA1-216ENST00000552909 DEPDC4Q8N2C3 294 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 CADM2Q8N3J6 435 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 FAM109AQ8N4B1 249 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms