RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 MMP25Q9NPA2 562 aa12.13□□□□□ -0.47
PTCH1-218ENST00000548945 PYCARDQ9ULZ3 195 aa12.13□□□□□ -0.47
PTCH1-218ENST00000548945 ZNF835Q9Y2P0 537 aa12.13□□□□□ -0.47
PTCH1-218ENST00000548945 SLC22A7Q9Y694 548 aa12.13□□□□□ -0.47
PTCH1-218ENST00000548945 MAP1AP78559 2803 aaPredicted RBP12.12□□□□□ -0.47
PTCH1-218ENST00000548945 ZCWPW2A0A1B0GU75 182 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 ASPDHA6ND91 283 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 COX6B1P14854 86 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 IL1RNP18510 177 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 SMSP52788 366 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 TBPL1P62380 186 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 SNRPNP63162 240 aaKnown RBP12.12□□□□□ -0.47
PTCH1-218ENST00000548945 CSNK1G2P78368 415 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 GPS1Q13098 491 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 CTBP1Q13363 440 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 TUBA3CQ13748 450 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 TUBA3EQ6PEY2 450 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 Q6ZPB1 254 aaPredicted RBP12.12□□□□□ -0.47
PTCH1-218ENST00000548945 UBE2R2Q712K3 238 aaPredicted RBP12.12□□□□□ -0.47
PTCH1-218ENST00000548945 PRSS41Q7RTY9 318 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 DENND6AQ8IWF6 608 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 BEST3Q8N1M1 668 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 HORMAD2Q8N7B1 307 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 PLPP5Q8NEB5 264 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 ZNF669Q96BR6 464 aaPredicted RBP12.12□□□□□ -0.47
PTCH1-218ENST00000548945 SCMH1Q96GD3 660 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 MAGED4Q96JG8 741 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 CCDC138Q96M89 665 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 GPR137Q96N19 417 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 GPR21Q99679 349 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 UTP23Q9BRU9 249 aaKnown RBP12.12□□□□□ -0.47
PTCH1-218ENST00000548945 KCNK13Q9HB14 408 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 FBXO6Q9NRD1 293 aaPredicted RBP12.12□□□□□ -0.47
PTCH1-218ENST00000548945 ABCF3Q9NUQ8 709 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 HCN3Q9P1Z3 774 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 SPG11Q96JI7 2443 aa12.12□□□□□ -0.47
PTCH1-218ENST00000548945 MED13LQ71F56 2210 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 IGHV3-20A0A0C4DH32 117 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 SGK494L7N484 410 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 C8GP07360 202 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 ESRRAP11474 423 aaPredicted RBP12.11□□□□□ -0.47
PTCH1-218ENST00000548945 CD46P15529 392 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 POU3F2P20265 443 aaPredicted RBP12.11□□□□□ -0.47
PTCH1-218ENST00000548945 EEF1DP29692 281 aaKnown RBP12.11□□□□□ -0.47
PTCH1-218ENST00000548945 GRK3P35626 688 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 CD96P40200 585 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 SLC1A2P43004 574 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 PMP22Q01453 160 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 SP140Q13342 867 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 HERC3Q15034 1050 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 OR1C1Q15619 314 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 UGT3A1Q6NUS8 523 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 PIWIL4Q7Z3Z4 852 aaKnown RBP12.11□□□□□ -0.47
PTCH1-218ENST00000548945 C17orf64Q86WR6 236 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 CRLF3Q8IUI8 442 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 CPNE9Q8IYJ1 553 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 SLC5A8Q8N695 610 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 TMEM178AQ8NBL3 297 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 TRIM58Q8NG06 486 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 SIGLEC12Q96PQ1 595 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 LPAR4Q99677 370 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 SARGQ9BW04 601 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 ZFHX3Q15911 3703 aa12.11□□□□□ -0.47
PTCH1-218ENST00000548945 NF1P21359 2839 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 MAGEB17A8MXT2 336 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 SLC16A5O15375 505 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 CEP104O60308 925 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 KRT14P02533 472 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 STATHP02808 62 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 SLC35G6P0C7Q6 338 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 MAGEA3P43357 314 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 RGS4P49798 205 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 TAS2R50P59544 299 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 SKP1P63208 163 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 ADORA2A-AS1P86434 159 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 MPP1Q00013 466 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 RHAGQ02094 409 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 ALDH6A1Q02252 535 aaKnown RBP12.1□□□□□ -0.47
PTCH1-218ENST00000548945 ABRAXAS2Q15018 415 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 TRIP13Q15645 432 aaPredicted RBP12.1□□□□□ -0.47
PTCH1-218ENST00000548945 NSDHLQ15738 373 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 C3AR1Q16581 482 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 SFT2D3Q587I9 215 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 ANKRD22Q5VYY1 191 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 FCRLBQ6BAA4 426 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 CAPN13Q6MZZ7 669 aaPredicted RBP12.1□□□□□ -0.47
PTCH1-218ENST00000548945 NIPAL1Q6NVV3 410 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 PAPD4Q6PIY7 484 aaKnown RBP12.1□□□□□ -0.47
PTCH1-218ENST00000548945 AGTRAPQ6RW13 159 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 LCTLQ6UWM7 567 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 ASPGQ86U10 573 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 PDSS2Q86YH6 399 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 SPPL2CQ8IUH8 684 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 PALM2Q8IXS6 379 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 AFAP1L2Q8N4X5 818 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 AMER2Q8N7J2 671 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 FAM98AQ8NCA5 519 aaKnown RBP12.1□□□□□ -0.47
PTCH1-218ENST00000548945 SLC13A3Q8WWT9 602 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 LURAP1Q96LR2 239 aa12.1□□□□□ -0.47
PTCH1-218ENST00000548945 SERPINB12Q96P63 405 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms