RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 C2CD2Q9Y426 696 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 KIAA1210Q9ULL0 1709 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 A0A0B4J203 849 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 TRBV4-1A0A0J9YWV2 114 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 C5orf51A6NDU8 294 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 C2CD4DB7Z1M9 353 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 NPIPA3F8WFD2 350 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 PGRMC2O15173 223 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 RTN2O75298 545 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 RAD51DO75771 328 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 CDK2AP2O75956 126 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 NADKO95544 446 aaPredicted RBP3.66□□□□□ -1.82
VPS29-205ENST00000548539 BAG2O95816 211 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 CLPTM1O96005 669 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 P4HA1P13674 534 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 CD59P13987 128 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 VCLP18206 1134 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 TIMP3P35625 211 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 CASP3P42574 277 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 IER3P46695 156 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 KHKP50053 298 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 SERPINH1P50454 418 aaKnown RBP3.66□□□□□ -1.82
VPS29-205ENST00000548539 CLDN17P56750 224 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 KIAA1024LP59773 190 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 MYL7Q01449 175 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 TEFQ10587 303 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 TRIM29Q14134 588 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 SGCBQ16585 318 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 ZNF789Q5FWF6 425 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 LRRC38Q5VT99 294 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 ALKBH5Q6P6C2 394 aaKnown RBP3.66□□□□□ -1.82
VPS29-205ENST00000548539 BTN2A1Q7KYR7 527 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 CPEB2Q7Z5Q1 589 aaKnown RBP3.66□□□□□ -1.82
VPS29-205ENST00000548539 GPR141Q7Z602 305 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 PRUNE1Q86TP1 453 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 SIAH3Q8IW03 269 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 KLHDC8AQ8IYD2 350 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 SAP25Q8TEE9 199 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 WBP2Q969T9 261 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 FAM46BQ96A09 425 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 GIMAP5Q96F15 307 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 PDLIM5Q96HC4 596 aaKnown RBP3.66□□□□□ -1.82
VPS29-205ENST00000548539 PRAC1Q96KF2 57 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 NEDD4LQ96PU5 975 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 CDCA3Q99618 268 aaPredicted RBP3.66□□□□□ -1.82
VPS29-205ENST00000548539 C17orf62Q9BQA9 187 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 ACPTQ9BZG2 426 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 FAM49AQ9H0Q0 323 aaPredicted RBP3.66□□□□□ -1.82
VPS29-205ENST00000548539 UBQLN3Q9H347 655 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 DPEP2Q9H4A9 486 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 C5orf66Q9H5L9 145 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 ATP13A3Q9H7F0 1226 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 C10orf88Q9H8K7 445 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 AKIRIN1Q9H9L7 192 aaPredicted RBP3.66□□□□□ -1.82
VPS29-205ENST00000548539 SPG21Q9NZD8 308 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 EPHA6Q9UF33 1036 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 SLC12A6Q9UHW9 1150 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 AGTPBP1Q9UPW5 1226 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 IL16Q14005 1332 aa3.66□□□□□ -1.82
VPS29-205ENST00000548539 MTMR11A4FU01 709 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 ANTXRLA6NF34 631 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 ANKDD1BA6NHY2 528 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 ZNF195O14628 629 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 KLF11O14901 512 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 KIF5CO60282 957 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 MT-ND3P03897 115 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 UMODP07911 640 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 HMBSP08397 361 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 PRSS56P0CW18 603 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 THEGLP0DJG4 465 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 HLA-DPA1P20036 260 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 GLIPR1P48060 266 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 SMSP52788 366 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 FKBP1BP68106 108 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 CETN1Q12798 172 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 NPRL3Q12980 569 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 TMEM132DQ14C87 1099 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 MAPK11Q15759 364 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 ZNF74Q16587 644 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 HFEQ30201 348 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 AARDQ4LEZ3 155 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 PDLIM3Q53GG5 364 aaPredicted RBP3.65□□□□□ -1.83
VPS29-205ENST00000548539 KLHL10Q6JEL2 608 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 FAM53AQ6NSI3 398 aaPredicted RBP3.65□□□□□ -1.83
VPS29-205ENST00000548539 PLBD1Q6P4A8 553 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 MEX3BQ6ZN04 569 aaKnown RBP3.65□□□□□ -1.83
VPS29-205ENST00000548539 ASPGQ86U10 573 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 CCDC60Q8IWA6 550 aaPredicted RBP3.65□□□□□ -1.83
VPS29-205ENST00000548539 DCUN1D3Q8IWE4 304 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 NIPA2Q8N8Q9 360 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 OR1L3Q8NH93 324 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 RNASE8Q8TDE3 154 aaKnown RBP3.65□□□□□ -1.83
VPS29-205ENST00000548539 APOBEC4Q8WW27 367 aaKnown RBP3.65□□□□□ -1.83
VPS29-205ENST00000548539 BCL2L2Q92843 193 aaPredicted RBP3.65□□□□□ -1.83
VPS29-205ENST00000548539 C10orf90Q96M02 699 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 RASL10BQ96S79 203 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 NACAP1Q9BZK3 213 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 P2RY12Q9H244 342 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 EGLN3Q9H6Z9 239 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms