RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 MAGEA1P43355 309 aa11.97□□□□□ -0.49
SCAF11-208ENST00000546534 TAS2R50P59544 299 aa11.97□□□□□ -0.49
SCAF11-208ENST00000546534 RELAQ04206 551 aa11.97□□□□□ -0.49
SCAF11-208ENST00000546534 ACTN3Q08043 901 aaPredicted RBP11.97□□□□□ -0.49
SCAF11-208ENST00000546534 TRIM14Q14142 442 aa11.97□□□□□ -0.49
SCAF11-208ENST00000546534 LINC01559Q495D7 138 aa11.97□□□□□ -0.49
SCAF11-208ENST00000546534 ANKRD20A4Q4UJ75 823 aa11.97□□□□□ -0.49
SCAF11-208ENST00000546534 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.97□□□□□ -0.49
SCAF11-208ENST00000546534 AARS2Q5JTZ9 985 aaKnown RBP11.97□□□□□ -0.49
SCAF11-208ENST00000546534 RPS19BP1Q86WX3 136 aaKnown RBP11.97□□□□□ -0.49
SCAF11-208ENST00000546534 LGI4Q8N135 537 aa11.97□□□□□ -0.49
SCAF11-208ENST00000546534 SEC16BQ96JE7 1060 aa11.97□□□□□ -0.49
SCAF11-208ENST00000546534 CATSPERZQ9NTU4 200 aa11.97□□□□□ -0.49
SCAF11-208ENST00000546534 UTP6Q9NYH9 597 aaKnown RBP11.97□□□□□ -0.49
SCAF11-208ENST00000546534 ANAPC5Q9UJX4 755 aa11.97□□□□□ -0.49
SCAF11-208ENST00000546534 USP27XA6NNY8 438 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 ARHGEF33A8MVX0 844 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 HS6ST1O60243 411 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 KLK8O60259 260 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 CDC40O60508 579 aaKnown RBP eCLIP11.96□□□□□ -0.49
SCAF11-208ENST00000546534 MFAP3LO75121 409 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 CTAG2O75638 210 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 TJP3O95049 919 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 CCNDBP1O95273 360 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 MATN4O95460 622 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 GAS8O95995 478 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 FOSL1P15407 271 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 TPP2P29144 1249 aaPredicted RBP11.96□□□□□ -0.49
SCAF11-208ENST00000546534 BCL6P41182 706 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 GRIA1P42261 906 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 TTPAP49638 278 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 MEOX1P50221 254 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 PMPCAQ10713 525 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 USP10Q14694 798 aaKnown RBP11.96□□□□□ -0.49
SCAF11-208ENST00000546534 ABRAXAS2Q15018 415 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 NSDHLQ15738 373 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 CMPK2Q5EBM0 449 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 ADCK2Q7Z695 626 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 KIF2BQ8N4N8 673 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 POGLUT1Q8NBL1 392 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 PPFIBP2Q8ND30 876 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 LPAR4Q99677 370 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 MACROD1Q9BQ69 325 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 TP63Q9H3D4 680 aaPredicted RBP11.96□□□□□ -0.49
SCAF11-208ENST00000546534 TRIM45Q9H8W5 580 aaPredicted RBP11.96□□□□□ -0.49
SCAF11-208ENST00000546534 ZNF358Q9NW07 568 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 ST6GALNAC2Q9UJ37 374 aa11.96□□□□□ -0.49
SCAF11-208ENST00000546534 SGK494L7N484 410 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 MYO1CO00159 1063 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 CD3EAPO15446 510 aaKnown RBP11.95□□□□□ -0.5
SCAF11-208ENST00000546534 PRMT3O60678 531 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 TPM3P06753 285 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 TFEBP19484 476 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 RPS3P23396 243 aaKnown RBP eCLIP11.95□□□□□ -0.5
SCAF11-208ENST00000546534 CYB561P49447 251 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 NR0B1P51843 470 aaKnown RBP11.95□□□□□ -0.5
SCAF11-208ENST00000546534 ITGA8P53708 1063 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 RWDD2BP57060 319 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 NUP107P57740 925 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 SLC26A5P58743 744 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 RHAGQ02094 409 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 LTBQ06643 244 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 GBX1Q14549 363 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 ARHGAP19Q14CB8 494 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 EMC4Q5J8M3 183 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 CTSL3PQ5NE16 218 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 PPP1R21Q6ZMI0 780 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 VN1R4Q7Z5H5 301 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 PCGF5Q86SE9 256 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 SULF2Q8IWU5 870 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 CLYBLQ8N0X4 340 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 PLPP5Q8NEB5 264 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 MCOLN3Q8TDD5 553 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 ELP5Q8TE02 316 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 ALG3Q92685 438 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 TSLPQ969D9 159 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 TMEM125Q96AQ2 219 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 PKP4Q99569 1192 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 POLDIP3Q9BY77 421 aaKnown RBP11.95□□□□□ -0.5
SCAF11-208ENST00000546534 RBCK1Q9BYM8 510 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 ABCF3Q9NUQ8 709 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 TCAF1Q9Y4C2 921 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 AKAP6Q13023 2319 aa11.95□□□□□ -0.5
SCAF11-208ENST00000546534 MAP1AP78559 2803 aaPredicted RBP11.94□□□□□ -0.5
SCAF11-208ENST00000546534 FAM237BA0A1B0GVD1 139 aa11.94□□□□□ -0.5
SCAF11-208ENST00000546534 ERI2A8K979 691 aaKnown RBP11.94□□□□□ -0.5
SCAF11-208ENST00000546534 E7ENX8 843 aa11.94□□□□□ -0.5
SCAF11-208ENST00000546534 H7BY64 318 aa11.94□□□□□ -0.5
SCAF11-208ENST00000546534 CDK2AP1O14519 115 aa11.94□□□□□ -0.5
SCAF11-208ENST00000546534 RDH16O75452 317 aa11.94□□□□□ -0.5
SCAF11-208ENST00000546534 PSIP1O75475 530 aaKnown RBP11.94□□□□□ -0.5
SCAF11-208ENST00000546534 NDUFS3O75489 264 aa11.94□□□□□ -0.5
SCAF11-208ENST00000546534 CDC123O75794 336 aaPredicted RBP11.94□□□□□ -0.5
SCAF11-208ENST00000546534 PDE9AO76083 593 aa11.94□□□□□ -0.5
SCAF11-208ENST00000546534 SLC16A8O95907 504 aa11.94□□□□□ -0.5
SCAF11-208ENST00000546534 TRHRP34981 398 aaPredicted RBP11.94□□□□□ -0.5
SCAF11-208ENST00000546534 CETN2P41208 172 aa11.94□□□□□ -0.5
SCAF11-208ENST00000546534 HLCSP50747 726 aa11.94□□□□□ -0.5
SCAF11-208ENST00000546534 PNLIPRP1P54315 467 aa11.94□□□□□ -0.5
SCAF11-208ENST00000546534 EIF3BP55884 814 aaKnown RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms