RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 A0A088AWK7 358 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 GOLGA8QA0A0J9YX86 632 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 GOLGA8OA6NCC3 632 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 SLC9B1P1A6NJY1 282 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 GOLGA8NF8WBI6 632 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 SLC30A4O14863 429 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 PIP5K1BO14986 540 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 GDF9O60383 454 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 GFRA3O60609 400 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 CEACAM1P13688 526 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 ZNF10P21506 573 aaPredicted RBP15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 BCL6P41182 706 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 GSTM5P46439 218 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 AQP5P55064 265 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 BTKQ06187 659 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 ZFP36L1Q07352 338 aaKnown RBP15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 EIF3IQ13347 325 aaKnown RBP15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 ABRAXAS2Q15018 415 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 RBBP5Q15291 538 aaKnown RBP15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 IMPG1Q17R60 797 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 GARNL3Q5VVW2 1013 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 PIGWQ7Z7B1 504 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 ASPGQ86U10 573 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 TRIM73Q86UV7 250 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 DDIASQ8IXT1 998 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 DNAJC22Q8N4W6 341 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 AGR3Q8TD06 166 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 TM4SF19Q96DZ7 209 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 NUDT22Q9BRQ3 303 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 MS4A8Q9BY19 250 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 ROGDIQ9GZN7 287 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 CLK4Q9HAZ1 481 aaKnown RBP15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 NPHS2Q9NP85 383 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 SOHLH2Q9NX45 425 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 ASIC5Q9NY37 505 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 VPS29Q9UBQ0 182 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 TRIM33Q9UPN9 1127 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 WBP11Q9Y2W2 641 aaKnown RBP15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 TIMM22Q9Y584 194 aa15.32■□□□□ 0.04
PRPF40A-212ENST00000545856 IGHV5-51A0A0C4DH38 117 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 IGHV5-10-1A0A0J9YXX1 117 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 TMEM233B4DJY2 109 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 FFAR3O14843 346 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 GPR42O15529 346 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 PDYNP01213 254 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 PRR35P0CG20 571 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 KITP10721 976 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 PCNAP12004 261 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 MYF5P13349 255 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 MAPK1P28482 360 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 ARFIP2P53365 341 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 PPP1CAP62136 330 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 YBX1P67809 324 aaKnown RBP15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 ZIC1Q15915 447 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 PDCD2Q16342 344 aaPredicted RBP15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 ATP6AP1LQ52LC2 224 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 DEPDC1Q5TB30 811 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 CDCP2Q5VXM1 449 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 CGB2Q6NT52 195 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 FBXO42Q6P3S6 717 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 USP53Q70EK8 1073 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 ANKS4BQ8N8V4 417 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 ANKRD53Q8N9V6 530 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 SLC13A3Q8WWT9 602 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 GAL3ST3Q96A11 431 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 QRFPRQ96P65 431 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 NUF2Q9BZD4 464 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 STRADBQ9C0K7 418 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 SLC6A16Q9GZN6 736 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 SPNS1Q9H2V7 528 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 TCF7L2Q9NQB0 619 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 TMEM45AQ9NWC5 275 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 ADAM29Q9UKF5 820 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 CCL27Q9Y4X3 112 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 KNTC1P50748 2209 aa15.31■□□□□ 0.04
PRPF40A-212ENST00000545856 SDHDO14521 159 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 NDUFAB1O14561 156 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 TM4SF5O14894 197 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 CTSVO60911 334 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 SKAP2O75563 359 aaPredicted RBP15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 GABRA4P48169 554 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 KHDRBS2Q5VWX1 349 aaKnown RBP15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 GALNT18Q6P9A2 607 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 ZNF574Q6ZN55 896 aaPredicted RBP15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 PAGE2Q7Z2X7 111 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 AGBL5Q8NDL9 886 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 ZNF740Q8NDX6 193 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 BCAS4Q8TDM0 211 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 CREB3L4Q8TEY5 395 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 FCRL4Q96PJ5 515 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 TUBB1Q9H4B7 451 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 C1orf109Q9NX04 203 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 MAPRE3Q9UPY8 281 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 ARL2BPQ9Y2Y0 163 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 FIS1Q9Y3D6 152 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 SLC22A7Q9Y694 548 aa15.3■□□□□ 0.04
PRPF40A-212ENST00000545856 A0A0G2JND7 137 aa15.29■□□□□ 0.04
PRPF40A-212ENST00000545856 FITM1A5D6W6 292 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms