RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 VWA5B2Q8N398 1253 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 NATD1Q8N6N6 113 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 TCEANCQ8N8B7 351 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 ATAD1Q8NBU5 361 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 OR5AK3PQ8NH89 298 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 L3HYPDHQ96EM0 354 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 GPR78Q96P69 363 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 NEDD4LQ96PU5 975 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 SAV1Q9H4B6 383 aaPredicted RBP13.8□□□□□ -0.2
LIMS1-215ENST00000544547 UTS2RQ9UKP6 389 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 RAI2Q9Y5P3 530 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 TLX2O43763 284 aaPredicted RBP13.79□□□□□ -0.2
LIMS1-215ENST00000544547 C1QAP02745 245 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 PRPS2P11908 318 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 GUCA1AP43080 201 aaPredicted RBP13.79□□□□□ -0.2
LIMS1-215ENST00000544547 ERVPABLB-1P60509 514 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 PPP2R2BQ00005 443 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 GALNT1Q10472 559 aaPredicted RBP13.79□□□□□ -0.2
LIMS1-215ENST00000544547 PROX2Q3B8N5 592 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 MARCH9Q86YJ5 346 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 CDK20Q8IZL9 346 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 PIAS4Q8N2W9 510 aaPredicted RBP13.79□□□□□ -0.2
LIMS1-215ENST00000544547 GTPBP2Q9BX10 602 aaKnown RBP13.79□□□□□ -0.2
LIMS1-215ENST00000544547 DERL2Q9GZP9 239 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 POFUT2Q9Y2G5 429 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 NUMA1Q14980 2115 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 SMIM35A0A1B0GVV1 85 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 TLR4O00206 839 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 EDNRBP24530 442 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 NOS3P29474 1203 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 SOX3P41225 446 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 PCBP1Q15365 356 aaKnown RBP eCLIP13.79□□□□□ -0.2
LIMS1-215ENST00000544547 FNDC3BQ53EP0 1204 aaKnown RBP13.79□□□□□ -0.2
LIMS1-215ENST00000544547 TIGD5Q53EQ6 642 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 PIK3R6Q5UE93 754 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 ZNF767PQ75MW2 155 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 ZNF558Q96NG5 402 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 ARPC5LQ9BPX5 153 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 TPT1P8Q9HAU6 139 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 KRCC1Q9NPI7 259 aaPredicted RBP13.79□□□□□ -0.2
LIMS1-215ENST00000544547 CRTAC1Q9NQ79 661 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 TAS2R16Q9NYV7 291 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 HCN2Q9UL51 889 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 CLCA1A8K7I4 914 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 A8MUA0 341 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 STX11O75558 287 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 RLN1P04808 185 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 PSMA3P25788 255 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 ZFP41Q8N8Y5 198 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 ERMAPQ96PL5 475 aaPredicted RBP13.79□□□□□ -0.2
LIMS1-215ENST00000544547 GINS4Q9BRT9 223 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 MRPL17Q9NRX2 175 aaKnown RBP13.79□□□□□ -0.2
LIMS1-215ENST00000544547 MGAT4AQ9UM21 535 aa13.79□□□□□ -0.2
LIMS1-215ENST00000544547 ZBTB42B2RXF5 422 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 FGF4P08620 206 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 GRK4P32298 578 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 RPL9P32969 192 aaKnown RBP13.78□□□□□ -0.2
LIMS1-215ENST00000544547 PBX3P40426 434 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 BUD31P41223 144 aaPredicted RBP13.78□□□□□ -0.2
LIMS1-215ENST00000544547 NKX3-2P78367 333 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 POM121L1PQ3SYA9 428 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 TAPT1Q6NXT6 567 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 IKBIPQ70UQ0 350 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 SLC38A2Q96QD8 506 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 DUSP26Q9BV47 211 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 SEMA3GQ9NS98 782 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 ADAMTS5Q9UNA0 930 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 SHANK3Q9BYB0 1731 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 A0A0G2JLL6 359 aaPredicted RBP13.78□□□□□ -0.2
LIMS1-215ENST00000544547 UNCXA6NJT0 531 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 IRAK2O43187 625 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 SBK3P0C264 359 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 RHOQP17081 205 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 CPN2P22792 545 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 RYKP34925 604 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 ACVRL1P37023 503 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 ISL1P61371 349 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 SNRPD1P62314 119 aaKnown RBP13.78□□□□□ -0.2
LIMS1-215ENST00000544547 GCNT6Q5T4J0 391 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 PRRT2Q7Z6L0 340 aaPredicted RBP13.78□□□□□ -0.2
LIMS1-215ENST00000544547 RBFAQ8N0V3 343 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 RIT1Q92963 219 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 FCRL4Q96PJ5 515 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 SPATA9Q9BWV2 254 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 MPZL2O60487 215 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 SPHARQ15513 63 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 SHQ1Q6PI26 577 aaKnown RBP13.78□□□□□ -0.2
LIMS1-215ENST00000544547 COMMD7Q86VX2 200 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 PSD2Q9BQI7 771 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 KLHL31Q9H511 634 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 CORO2BQ9UQ03 480 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 RPL36Q9Y3U8 105 aaKnown RBP13.78□□□□□ -0.2
LIMS1-215ENST00000544547 COL1A2P08123 1366 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 STOMP27105 288 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 RGS6P49758 472 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 SLC9A5Q14940 896 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 TATDN3Q17R31 274 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 LETMD1Q6P1Q0 360 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 SIMC1Q8NDZ2 872 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 TEX47Q8TBZ9 253 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms