RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 LANCL2Q9NS86 450 aa16.75■□□□□ 0.27
CLSTN3-214ENST00000542663 PPT2Q9UMR5 302 aa16.75■□□□□ 0.27
CLSTN3-214ENST00000542663 HRH3Q9Y5N1 445 aa16.75■□□□□ 0.27
CLSTN3-214ENST00000542663 NIPBLQ6KC79 2804 aaeCLIP16.75■□□□□ 0.27
CLSTN3-214ENST00000542663 KCNE1BA0A087WTH5 132 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 ZNF839A8K0R7 811 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 H3BMM5 538 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 PRRG2O14669 202 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 FANCGO15287 622 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 NME2P1O60361 137 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 ZNF24P17028 368 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 NME2P22392 152 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 PTGER1P34995 402 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 RPL22P35268 128 aaKnown RBP16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 CLCN7P51798 805 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 SNX1Q13596 522 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 USP10Q14694 798 aaKnown RBP16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 ABRAXAS2Q15018 415 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 MAPKAPK3Q16644 382 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 MRNIPQ6NTE8 343 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 LGI4Q8N135 537 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 SLC5A8Q8N695 610 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 KCT2Q8NC54 265 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 PLPP5Q8NEB5 264 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 GIMAP7Q8NHV1 300 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 MCOLN3Q8TDD5 553 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 TSLPQ969D9 159 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 TM4SF19Q96DZ7 209 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 PANX2Q96RD6 677 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 TCF12Q99081 682 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 KIFC1Q9BW19 673 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 TSPY26PQ9H489 355 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 CDCP1Q9H5V8 836 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 NPDC1Q9NQX5 325 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 EIF2B3Q9NR50 452 aaKnown RBP16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 SYBUQ9NX95 663 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 PAK5Q9P286 719 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 SH2B3Q9UQQ2 575 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 DNAJC13O75165 2243 aa16.74■□□□□ 0.27
CLSTN3-214ENST00000542663 NAV3Q8IVL0 2385 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 KIF5CO60282 957 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 RDH16O75452 317 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 SLC25A12O75746 678 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 CDC123O75794 336 aaPredicted RBP16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 IPO7O95373 1038 aaKnown RBP16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 CD1EP15812 388 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 MGAT1P26572 445 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 IMPA1P29218 277 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 NPY2RP49146 381 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 SLC26A5P58743 744 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 RPS15AP62244 130 aaKnown RBP16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 TFF3Q07654 80 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 NSDHLQ15738 373 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 RNF187Q5TA31 235 aaPredicted RBP16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 THEMIS2Q5TEJ8 643 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 CENPUQ71F23 418 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 SDCCAG8Q86SQ7 713 aaPredicted RBP16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 SYCE1Q8N0S2 351 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 KIF2BQ8N4N8 673 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 HORMAD2Q8N7B1 307 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 ZCCHC10Q8TBK6 192 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 ELP5Q8TE02 316 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 ASB11Q8WXH4 323 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 LPAR4Q99677 370 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 OLFM1Q99784 485 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 RBCK1Q9BYM8 510 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 FRMD8P1Q9BZ68 369 aaPredicted RBP16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 TRIM5Q9C035 493 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 TMEM184CQ9NVA4 438 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 COQ3Q9NZJ6 369 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 TNFRSF10DQ9UBN6 386 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 MED16Q9Y2X0 877 aa16.73■□□□□ 0.27
CLSTN3-214ENST00000542663 MAP1AP78559 2803 aaPredicted RBP16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 E5RI56 91 aa16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 GFYI3L273 518 aa16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 SYF2O95926 243 aaKnown RBP16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 F7P08709 466 aaPredicted RBP16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 OGNP20774 298 aaKnown RBP16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 TPP2P29144 1249 aaPredicted RBP16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 SKIV2L2P42285 1042 aaKnown RBP16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 ART1P52961 327 aa16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 ACTN3Q08043 901 aaPredicted RBP16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 CUL1Q13616 776 aa16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 RPS19BP1Q86WX3 136 aaKnown RBP16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 PRELID2Q8N945 189 aa16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 CCDC89Q8N998 374 aa16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 PEX11GQ96HA9 241 aa16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 TRIM45Q9H8W5 580 aaPredicted RBP16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 ANKHQ9HCJ1 492 aa16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 BFARQ9NZS9 450 aa16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 NAALAD2Q9Y3Q0 740 aa16.72■□□□□ 0.27
CLSTN3-214ENST00000542663 PRRC2AP48634 2157 aaKnown RBP16.71■□□□□ 0.27
CLSTN3-214ENST00000542663 FEZF1A0PJY2 475 aa16.71■□□□□ 0.27
CLSTN3-214ENST00000542663 NKX2-6A6NCS4 301 aa16.71■□□□□ 0.27
CLSTN3-214ENST00000542663 ZNF860A6NHJ4 632 aa16.71■□□□□ 0.27
CLSTN3-214ENST00000542663 MAGEB17A8MXT2 336 aa16.71■□□□□ 0.27
CLSTN3-214ENST00000542663 NDC80O14777 642 aa16.71■□□□□ 0.27
CLSTN3-214ENST00000542663 LCMT2O60294 686 aaKnown RBP16.71■□□□□ 0.27
CLSTN3-214ENST00000542663 COILP38432 576 aaPredicted RBP16.71■□□□□ 0.27
CLSTN3-214ENST00000542663 TAS2R50P59544 299 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms