RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 RHBGQ9H310 441 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 INTS9Q9NV88 658 aaKnown RBP16.35■□□□□ 0.21
LIG1-204ENST00000542460 MSRB2Q9Y3D2 182 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 TSC22D4Q9Y3Q8 395 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 PTPRBP23467 1997 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 SNRNP200O75643 2136 aaKnown RBP16.35■□□□□ 0.21
LIG1-204ENST00000542460 FITM1A5D6W6 292 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 TRABD2BA6NFA1 517 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 TMEM114B3SHH9 223 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 SLC35G6P0C7Q6 338 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 RBMS1P29558 406 aaKnown RBP16.35■□□□□ 0.21
LIG1-204ENST00000542460 SERPINB1P30740 379 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 PWP1Q13610 501 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 GRM7Q14831 915 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 ZRSR2Q15696 482 aaKnown RBP16.35■□□□□ 0.21
LIG1-204ENST00000542460 ARL13AQ5H913 290 aaPredicted RBP16.35■□□□□ 0.21
LIG1-204ENST00000542460 PWWP2BQ6NUJ5 590 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 TMEM126BQ8IUX1 230 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.35■□□□□ 0.21
LIG1-204ENST00000542460 CDYL2Q8N8U2 506 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 METTL6Q8TCB7 284 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 ADGRE2Q9UHX3 823 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 B3GALT1Q9Y5Z6 326 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 NVLO15381 856 aaKnown RBP16.34■□□□□ 0.21
LIG1-204ENST00000542460 ZSCAN9O15535 394 aaPredicted RBP16.34■□□□□ 0.21
LIG1-204ENST00000542460 NDUFS4O43181 175 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 SNUPNO95149 360 aaKnown RBP16.34■□□□□ 0.21
LIG1-204ENST00000542460 ENO1P06733 434 aaKnown RBP16.34■□□□□ 0.21
LIG1-204ENST00000542460 PCNAP12004 261 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 PIK3CBP42338 1070 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 STX3Q13277 289 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 PRTGQ2VWP7 1150 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 C10orf62Q5T681 223 aaPredicted RBP16.34■□□□□ 0.21
LIG1-204ENST00000542460 FRG2Q64ET8 278 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 ATG16L1Q676U5 607 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 TTC19Q6DKK2 380 aaPredicted RBP16.34■□□□□ 0.21
LIG1-204ENST00000542460 CUZD1Q86UP6 607 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 TTC29Q8NA56 475 aaPredicted RBP16.34■□□□□ 0.21
LIG1-204ENST00000542460 WDR20Q8TBZ3 569 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 DYDC1Q8WWB3 177 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 PMEPA1Q969W9 287 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 NXPE2Q96DL1 559 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 FRG2BQ96QU4 278 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 SLC29A3Q9BZD2 475 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 MANSC1Q9H8J5 431 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 STARD5Q9NSY2 213 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 SNX6Q9UNH7 406 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 PCDHB3Q9Y5E6 796 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 PCDHGA7Q9Y5G6 932 aa16.34■□□□□ 0.21
LIG1-204ENST00000542460 TPRP12270 2363 aaKnown RBP16.33■□□□□ 0.2
LIG1-204ENST00000542460 C9orf172C9J069 976 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 FFAR3O14843 346 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 GPR42O15529 346 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 ZNF749O43361 778 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 CLEC3AO75596 197 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 SCRG1O75711 98 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 DXOO77932 396 aaKnown RBP16.33■□□□□ 0.2
LIG1-204ENST00000542460 SERPIND1P05546 499 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 CAPN1P07384 714 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 CHRNGP07510 517 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 SERPINA6P08185 405 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 HMOX2P30519 316 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 SLC1A6P48664 564 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 EMP3P54852 163 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 ABCE1P61221 599 aaKnown RBP16.33■□□□□ 0.2
LIG1-204ENST00000542460 CYP4F2P78329 520 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 RGS1Q08116 209 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 IFT88Q13099 833 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 HKDC1Q2TB90 917 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 FAM214AQ32MH5 1076 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 YOD1Q5VVQ6 348 aaPredicted RBP16.33■□□□□ 0.2
LIG1-204ENST00000542460 CES4AQ5XG92 561 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 HOMEZQ8IX15 550 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 NT5CQ8TCD5 201 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 CREB3L4Q8TEY5 395 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 ZNF473Q8WTR7 871 aaKnown RBP16.33■□□□□ 0.2
LIG1-204ENST00000542460 NDC1Q9BTX1 674 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 SHCBP1LQ9BZQ2 653 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 ELOVL6Q9H5J4 265 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 RUVBL1Q9Y265 456 aaKnown RBP16.33■□□□□ 0.2
LIG1-204ENST00000542460 AK5Q9Y6K8 562 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 ACACBO00763 2458 aa16.33■□□□□ 0.2
LIG1-204ENST00000542460 HYKKA2RU49 373 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 KLF11O14901 512 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 P2RX6O15547 441 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 CRCPO75575 148 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 TIAF1O95411 115 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 HSPA4LO95757 839 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 KRT6AP02538 564 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 STATHP02808 62 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 KRT6BP04259 564 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 FGF4P08620 206 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 HBQ1P09105 142 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 ARRB2P32121 409 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 KRT6CP48668 564 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 ATP1A2P50993 1020 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 ARSFP54793 590 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 PHEXP78562 749 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 BST1Q10588 318 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 PRAMEF17Q5VTA0 474 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms