RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 FAHD1Q6P587 224 aa10□□□□□ -0.81
CDC42SE1-207ENST00000540998 SLC24A5Q71RS6 500 aa10□□□□□ -0.81
CDC42SE1-207ENST00000540998 CBLL1Q75N03 491 aa10□□□□□ -0.81
CDC42SE1-207ENST00000540998 SLC46A3Q7Z3Q1 461 aa10□□□□□ -0.81
CDC42SE1-207ENST00000540998 SLC44A2Q8IWA5 706 aaPredicted RBP10□□□□□ -0.81
CDC42SE1-207ENST00000540998 NXPE1Q8N323 547 aa10□□□□□ -0.81
CDC42SE1-207ENST00000540998 SCAMP4Q969E2 229 aa10□□□□□ -0.81
CDC42SE1-207ENST00000540998 TRMT61AQ96FX7 289 aaKnown RBP10□□□□□ -0.81
CDC42SE1-207ENST00000540998 TTYH2Q9BSA4 534 aa10□□□□□ -0.81
CDC42SE1-207ENST00000540998 GABARAPL1Q9H0R8 117 aa10□□□□□ -0.81
CDC42SE1-207ENST00000540998 LINC00597Q9H2U6 94 aa10□□□□□ -0.81
CDC42SE1-207ENST00000540998 ADPRHL2Q9NX46 363 aa10□□□□□ -0.81
CDC42SE1-207ENST00000540998 EHD3Q9NZN3 535 aa10□□□□□ -0.81
CDC42SE1-207ENST00000540998 NDUFAF4Q9P032 175 aa10□□□□□ -0.81
CDC42SE1-207ENST00000540998 RANBP2P49792 3224 aaKnown RBP9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 HELZP42694 1942 aaKnown RBP9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 GABRR3A8MPY1 467 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 TNFRSF11BO00300 401 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 GUCY1B2O75343 617 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 APOL3O95236 402 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 TRBC1P01850 177 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 C9P02748 559 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 LHCGRP22888 699 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 GRK3P35626 688 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 ITGA1P56199 1179 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 SMAD3P84022 425 aaKnown RBP9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 ZNF385BQ569K4 471 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 FRG2Q64ET8 278 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 HS6ST3Q8IZP7 471 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 C1orf52Q8N6N3 182 aaKnown RBP9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 B3GNT7Q8NFL0 401 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 OR10G2Q8NGC3 310 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 CIDECQ96AQ7 238 aaPredicted RBP9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 TXNDC15Q96J42 360 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 FRG2BQ96QU4 278 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 ZIC5Q96T25 663 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 GPATCH2Q9NW75 528 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 CLEC2DQ9UHP7 191 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 LYVE1Q9Y5Y7 322 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 CFAP20Q9Y6A4 193 aaKnown RBP9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 CLDN24A6NM45 220 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 FAM47E-STBD1D6RA91 191 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 ADAMTS4O75173 837 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 CYBAP13498 195 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 SSTR4P31391 388 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 ABRQ12979 859 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 PPIGQ13427 754 aaKnown RBP eCLIP9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 TRIM71Q2Q1W2 868 aaKnown RBP9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 PAQR6Q6TCH4 344 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 EIF3MQ7L2H7 374 aaKnown RBP9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 OTOP2Q7RTS6 562 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 ABI3BPQ7Z7G0 1075 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 C11orf74Q86VG3 221 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 LGI4Q8N135 537 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 CELF5Q8N6W0 485 aaKnown RBP9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 HRASLS5Q96KN8 279 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 NRTNQ99748 197 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 TCF25Q9BQ70 676 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 CNPPD1Q9BV87 410 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 MMP28Q9H239 520 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 C11orf16Q9NQ32 467 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 MUTYHQ9UIF7 546 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 TMPRSS11EQ9UL52 423 aa9.99□□□□□ -0.81
CDC42SE1-207ENST00000540998 TMEM88BA6NKF7 163 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 SUV39H1O43463 412 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 DNAJB5O75953 348 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 CDK1P06493 297 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 PSMA3P25788 255 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 S100A5P33763 92 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 RGS6P49758 472 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 RPS26P62854 115 aaKnown RBP9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 MEF2AQ02078 507 aaPredicted RBP9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 BCL2L1Q07817 233 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 DBPQ10586 325 aaPredicted RBP9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 TCTN1Q2MV58 587 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 XKR6Q5GH73 641 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 DGKKQ5KSL6 1271 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 TXNDC8Q6A555 127 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 USP43Q70EL4 1123 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 TMCO2Q7Z6W1 182 aaPredicted RBP9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 SERPINA11Q86U17 422 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 MEX3DQ86XN8 651 aaKnown RBP9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 OR52E4Q8NGH9 312 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 AUTS2Q8WXX7 1259 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 SPATA17Q96L03 361 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 NUAK2Q9H093 628 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 SMG9Q9H0W8 520 aaKnown RBP9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 IFT52Q9Y366 437 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 MAP4K5Q9Y4K4 846 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 N6AMT1Q9Y5N5 214 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 CLCA1A8K7I4 914 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 H3BQ06 376 aaPredicted RBP9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 NRG2O14511 850 aaPredicted RBP9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 KPNA5O15131 536 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 GJA1P17302 382 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 CD9P21926 228 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 PREPP48147 710 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 CSNK1DP48730 415 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 CXCR4P61073 352 aa9.98□□□□□ -0.81
CDC42SE1-207ENST00000540998 IRF8Q02556 426 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms