RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 PIK3CBP42338 1070 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 ETV4P43268 484 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 SERPINB4P48594 390 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 ATP1A2P50993 1020 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 NAGLUP54802 743 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 STXBP1P61764 594 aaKnown RBP16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 FAM53BQ14153 422 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 SLBPQ14493 270 aaKnown RBP eCLIP16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 KCNAB1Q14722 419 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 PCLAFQ15004 111 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 RBBP5Q15291 538 aaKnown RBP16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 RBBP7Q16576 425 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 C18orf21Q32NC0 220 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 TBC1D25Q3MII6 688 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 WASHC2DQ5SRD0 308 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 CATSPEREQ5SY80 951 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 RHBDD2Q6NTF9 364 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 PRMT9Q6P2P2 845 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 ASPGQ86U10 573 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 FAM20CQ8IXL6 584 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 LAS2Q8IYD9 372 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 ESX1Q8N693 406 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 ARFGAP2Q8N6H7 521 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 CSNK1A1LQ8N752 337 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 CCNYL1Q8N7R7 359 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 TMEM237Q96Q45 408 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 SLC29A3Q9BZD2 475 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 ULBP3Q9BZM4 244 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 RHBGQ9H310 441 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 CCDC86Q9H6F5 360 aaKnown RBP16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 ACTR5Q9H9F9 607 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 NMRK1Q9NWW6 199 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 SLC17A7Q9P2U7 560 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 TRPS1Q9UHF7 1281 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 KLHL20Q9Y2M5 609 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 B3GALT1Q9Y5Z6 326 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 HEATR5BQ9P2D3 2071 aa16.74■□□□□ 0.27
CLSTN3-210ENST00000540931 H0YGG7 62 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 BRINP1O60477 761 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 ESRRBO95718 433 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 KRT6AP02538 564 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 KRT6BP04259 564 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 DHRS4L1P0CG22 281 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 HGFP14210 728 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 SLC5A2P31639 672 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 KRT6CP48668 564 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 PCBP4P57723 403 aaKnown RBP16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 VSX2P58304 361 aaPredicted RBP16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 ARF3P61204 181 aaPredicted RBP16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 IFT88Q13099 833 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 HERC3Q15034 1050 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 UNC50Q53HI1 259 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 FRMD7Q6ZUT3 714 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 CHSY3Q70JA7 882 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 ABHD13Q7L211 337 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 MYLK4Q86YV6 388 aaPredicted RBP16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 C10orf107Q8IVU9 208 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 OR1L3Q8NH93 324 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 NT5CQ8TCD5 201 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 FGF11Q92914 225 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 TM4SF19Q96DZ7 209 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 ROGDIQ9GZN7 287 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 SEMA4BQ9NPR2 832 aaPredicted RBP16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 ASCL3Q9NQ33 180 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 SLC22A7Q9Y694 548 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 LAMA5O15230 3695 aa16.73■□□□□ 0.27
CLSTN3-210ENST00000540931 ADAMTS20P59510 1910 aa16.72■□□□□ 0.27
CLSTN3-210ENST00000540931 HYKKA2RU49 373 aa16.72■□□□□ 0.27
CLSTN3-210ENST00000540931 EIF2S1P05198 315 aaKnown RBP16.72■□□□□ 0.27
CLSTN3-210ENST00000540931 ALDH3A1P30838 453 aa16.72■□□□□ 0.27
CLSTN3-210ENST00000540931 ABHD18Q0P651 414 aa16.72■□□□□ 0.27
CLSTN3-210ENST00000540931 PRTGQ2VWP7 1150 aa16.72■□□□□ 0.27
CLSTN3-210ENST00000540931 TMEM35AQ53FP2 167 aa16.72■□□□□ 0.27
CLSTN3-210ENST00000540931 FBXO48Q5FWF7 155 aa16.72■□□□□ 0.27
CLSTN3-210ENST00000540931 ATG16L1Q676U5 607 aa16.72■□□□□ 0.27
CLSTN3-210ENST00000540931 TTC19Q6DKK2 380 aaPredicted RBP16.72■□□□□ 0.27
CLSTN3-210ENST00000540931 C6orf15Q6UXA7 325 aaPredicted RBP16.72■□□□□ 0.27
CLSTN3-210ENST00000540931 GPRIN3Q6ZVF9 776 aa16.72■□□□□ 0.27
CLSTN3-210ENST00000540931 CLIP3Q96DZ5 547 aa16.72■□□□□ 0.27
CLSTN3-210ENST00000540931 DPH1Q9BZG8 443 aa16.72■□□□□ 0.27
CLSTN3-210ENST00000540931 PRM3Q9NNZ6 103 aa16.72■□□□□ 0.27
CLSTN3-210ENST00000540931 PADI1Q9ULC6 663 aa16.72■□□□□ 0.27
CLSTN3-210ENST00000540931 A0A1B0GX78 115 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 TMEM114B3SHH9 223 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 C9orf172C9J069 976 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 H3BMH7 237 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 FOXE1O00358 373 aaPredicted RBP16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 ZNF749O43361 778 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 PRAMEF10O60809 474 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 CRCPO75575 148 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 STK17BO94768 372 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 CHEK2O96017 543 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 LIPCP11150 499 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 HSD3B1P14060 373 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 CREB1P16220 341 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 EPORP19235 508 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 PTX3P26022 381 aaPredicted RBP16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 HSD3B2P26439 372 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 VARSP26640 1264 aaKnown RBP16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 ETV5P41161 510 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms