RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 STSP08842 583 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 CD22P20273 847 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 HOXA9P31269 272 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 SLC19A1P41440 591 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 OR1E2P47887 323 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 SLC6A12P48065 614 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 DEFB103AP81534 67 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 MRPS15P82914 257 aaKnown RBP12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 P3H2Q8IVL5 708 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 ZNF689Q96CS4 500 aaPredicted RBP12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 ASIC4Q96FT7 647 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 CAPNS2Q96L46 248 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 HHIPQ96QV1 700 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 C19orf43Q9BQ61 176 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 COPS4Q9BT78 406 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 SLC12A9Q9BXP2 914 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 ATG10Q9H0Y0 220 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 KLHL3Q9UH77 587 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 TESMINQ9Y4I5 508 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 TMEM202A6NGA9 273 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 SGTAO43765 313 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 SCELO95171 688 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 TGFBR2P37173 567 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 CASP3P42574 277 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 ZMAT1Q5H9K5 638 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 SVOPLQ8N434 492 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 AADATQ8N5Z0 425 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 OR52E4Q8NGH9 312 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 SCAMP4Q969E2 229 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 MCCC1Q96RQ3 725 aaPredicted RBP12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 SLC29A3Q9BZD2 475 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 KCNH6Q9H252 994 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 ZDHHC6Q9H6R6 413 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 EXOSC4Q9NPD3 245 aaKnown RBP12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 TBC1D14Q9P2M4 693 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 MAN2B2Q9Y2E5 1009 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 PPIL1Q9Y3C6 166 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 GPSM3Q9Y4H4 160 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 ANKRD34BA5PLL1 514 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 M0R082 166 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 RFXAPO00287 272 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 DSCR3O14972 297 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 TGM5O43548 720 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 WBP4O75554 376 aaKnown RBP12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 HPRP00739 348 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 ACPPP15309 386 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 GABARAPL2P60520 117 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 TIGD6Q17RP2 521 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 TTLL9Q3SXZ7 439 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 ATG9BQ674R7 924 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 ADNP2Q6IQ32 1131 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 METTL2BQ6P1Q9 378 aaKnown RBP12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 KLHL17Q6TDP4 642 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 APOLD1Q96LR9 279 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 EMILIN2Q9BXX0 1053 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 SLC46A2Q9BY10 475 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 BRD9Q9H8M2 597 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 USE1Q9NZ43 259 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 B4GALT6Q9UBX8 382 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 TMEM98Q9Y2Y6 226 aa12.13□□□□□ -0.47
SFSWAP-208ENST00000539506 PNMA8CA0A1B0GUJ8 204 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 FAM220BPB1ANY3 271 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 LEFTY2O00292 366 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 IDH3BO43837 385 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 KRT6AP02538 564 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 KRT6BP04259 564 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 KRT8P05787 483 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 RETP07949 1114 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 CCDC159P0C7I6 412 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 CBSLP0DN79 551 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 S100A3P33764 101 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 CBSP35520 551 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 CCR2P41597 374 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 KRT6CP48668 564 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 TOP3AQ13472 1001 aaPredicted RBP12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 BOP1Q14137 746 aaKnown RBP12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 MAD2L1BPQ15013 274 aaPredicted RBP12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 MPPE1Q53F39 396 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 OR2T5Q6IEZ7 315 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 C22orf39Q6P5X5 142 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 TMEM25Q86YD3 366 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 CLECL1Q8IZS7 167 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 DEPDC4Q8N2C3 294 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 CPXM2Q8N436 756 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 OR2T29Q8NH02 315 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 ZNF558Q96NG5 402 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 DUSP21Q9H596 190 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 RC3H2Q9HBD1 1191 aaKnown RBP12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 NECTIN3Q9NQS3 549 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 FBXO8Q9NRD0 319 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 RLIMQ9NVW2 624 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 OGDHLQ9ULD0 1010 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 RNF6Q9Y252 685 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 H3BM21 787 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 NUAK1O60285 661 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 LILRB3O75022 631 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 URODP06132 367 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 AMD1P17707 334 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 MAPK8P45983 427 aa12.12□□□□□ -0.47
SFSWAP-208ENST00000539506 SPINT3P49223 89 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms