RNA–Protein interactions for RNA: ENST00000538708.5

PTPRB-204, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-204ENST00000538708 DLG1Q12959 904 aa9.18□□□□□ -0.94
PTPRB-204ENST00000538708 RAB39AQ14964 217 aa9.18□□□□□ -0.94
PTPRB-204ENST00000538708 ABHD17BQ5VST6 288 aa9.18□□□□□ -0.94
PTPRB-204ENST00000538708 OR4F3Q6IEY1 312 aa9.18□□□□□ -0.94
PTPRB-204ENST00000538708 PNLDC1Q8NA58 520 aaKnown RBP9.18□□□□□ -0.94
PTPRB-204ENST00000538708 OR4F6Q8NGB9 312 aa9.18□□□□□ -0.94
PTPRB-204ENST00000538708 OR5L2Q8NGL0 311 aa9.18□□□□□ -0.94
PTPRB-204ENST00000538708 NFKBIDQ8NI38 313 aa9.18□□□□□ -0.94
PTPRB-204ENST00000538708 FIBINQ8TAL6 211 aa9.18□□□□□ -0.94
PTPRB-204ENST00000538708 DERL2Q9GZP9 239 aa9.18□□□□□ -0.94
PTPRB-204ENST00000538708 MS4A12Q9NXJ0 267 aa9.18□□□□□ -0.94
PTPRB-204ENST00000538708 K7ERQ8 282 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 GJA8P48165 433 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 VBP1P61758 197 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 ACY1Q03154 408 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 CBX3Q13185 183 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 DUOXA1Q1HG43 343 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 FAM182AQ5T1J6 154 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 TRMT10BQ6PF06 316 aaKnown RBP9.17□□□□□ -0.94
PTPRB-204ENST00000538708 APLFQ8IW19 511 aaPredicted RBP9.17□□□□□ -0.94
PTPRB-204ENST00000538708 RADILQ96JH8 1075 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 PLEKHG4BQ96PX9 1271 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 TVP23BQ9NYZ1 205 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 TCRBV7S3A2A0A539 114 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 CHRM1P11229 460 aaPredicted RBP9.17□□□□□ -0.94
PTPRB-204ENST00000538708 MYOGP15173 224 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 RPS9P46781 194 aaKnown RBP9.17□□□□□ -0.94
PTPRB-204ENST00000538708 STC1P52823 247 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 HADHBP55084 474 aaKnown RBP9.17□□□□□ -0.94
PTPRB-204ENST00000538708 ERVK-8P63133 956 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 GALK2Q01415 458 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 ZNF234Q14588 700 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 TMEM225Q6GV28 225 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 SH3BGRL2Q9UJC5 107 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 TMED5Q9Y3A6 229 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 BLOC1S5-TXNDC5H3BN57 136 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 PROS1P07225 676 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 MPC1LP0DKB6 136 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 GLDCP23378 1020 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 PTGIRP43119 386 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 RNF144AP50876 292 aaPredicted RBP9.17□□□□□ -0.94
PTPRB-204ENST00000538708 FLYWCH1Q4VC44 716 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 OR2L3Q8NG85 312 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 ROPN1LQ96C74 230 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 CEP295NLQ96MC4 621 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 C7orf26Q96N11 449 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 UHRF1Q96T88 793 aaPredicted RBP9.17□□□□□ -0.94
PTPRB-204ENST00000538708 MARCH7Q9H992 704 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 ASB6Q9NWX5 421 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 ZNF222Q9UK12 451 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 PCDHGA6Q9Y5G7 932 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 WRBO00258 174 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 CAPN5O15484 640 aaPredicted RBP9.17□□□□□ -0.94
PTPRB-204ENST00000538708 LATO43561 262 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 EDF1O60869 148 aaKnown RBP9.17□□□□□ -0.94
PTPRB-204ENST00000538708 SIX3O95343 332 aaPredicted RBP9.17□□□□□ -0.94
PTPRB-204ENST00000538708 P2RY2P41231 377 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 CLEC12AQ5QGZ9 265 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 TMEM198Q66K66 360 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 RTL10Q7L3V2 364 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 ARL10Q8N8L6 244 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 C1orf216Q8TAB5 229 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 SNRNP27Q8WVK2 155 aaKnown RBP9.17□□□□□ -0.94
PTPRB-204ENST00000538708 ATXN10Q9UBB4 475 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 SLCO3A1Q9UIG8 710 aa9.17□□□□□ -0.94
PTPRB-204ENST00000538708 DNAJC25-GNG10A0A024R161 153 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 A8MVJ9 347 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 OR1I1O60431 355 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 FARS2O95363 451 aaKnown RBP9.16□□□□□ -0.94
PTPRB-204ENST00000538708 ITGB1P05556 798 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 CST5P28325 142 aaPredicted RBP9.16□□□□□ -0.94
PTPRB-204ENST00000538708 HOXA11P31270 313 aaPredicted RBP9.16□□□□□ -0.94
PTPRB-204ENST00000538708 MAP3K8P41279 467 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 KCNC1P48547 511 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 TXNRD3NBQ6F5E7 133 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 CILP2Q8IUL8 1156 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 C7orf57Q8NEG2 295 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 MYLIPQ8WY64 445 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 TMEM234Q8WY98 164 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 KCNC2Q96PR1 638 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 ZNF184Q99676 751 aaPredicted RBP9.16□□□□□ -0.94
PTPRB-204ENST00000538708 NAA11Q9BSU3 229 aaPredicted RBP9.16□□□□□ -0.94
PTPRB-204ENST00000538708 OSBPL11Q9BXB4 747 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 TCF7L1Q9HCS4 588 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 HPF1Q9NWY4 346 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 POFUT2Q9Y2G5 429 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 DAPL1A0PJW8 107 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 M0QZQ0 153 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 SOX1O00570 391 aaPredicted RBP9.16□□□□□ -0.94
PTPRB-204ENST00000538708 UNC5CO95185 931 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 IRF2P14316 349 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 GABRA3P34903 492 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 CCT3P49368 545 aaKnown RBP9.16□□□□□ -0.94
PTPRB-204ENST00000538708 ZNF84P51523 738 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 ARSFP54793 590 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 DPYSQ14117 519 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 MLF2Q15773 248 aaPredicted RBP9.16□□□□□ -0.94
PTPRB-204ENST00000538708 TMPPEQ6ZT21 453 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 ADGRD2Q7Z7M1 963 aa9.16□□□□□ -0.94
PTPRB-204ENST00000538708 CPNE8Q86YQ8 564 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms