RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 A0A0A6YYJ9 748 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 WRBO00258 174 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 SYN3O14994 580 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 ALDOCP09972 364 aaKnown RBP10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 SLC35E2BP0CK96 405 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 JUPP14923 745 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 GGT1P19440 569 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 PSMB4P28070 264 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 TNFSF9P41273 254 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 NRIP1P48552 1158 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 RGS6P49758 472 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 KCNQ1P51787 676 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 ZNF91Q05481 1191 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 GTF2H3Q13889 308 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 DMC1Q14565 340 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 ZNF367Q7RTV3 350 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 OVCH2Q7RTZ1 564 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 ZSWIM9Q86XI8 627 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 PHF21BQ96EK2 531 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 TRMT61AQ96FX7 289 aaKnown RBP10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 NSUN3Q9H649 340 aaKnown RBP10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 RBFOX1Q9NWB1 397 aaKnown RBP10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 HRO43593 1189 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 DHFRP00374 187 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 STOMP27105 288 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 HERVK_113P63132 956 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 CSHL1Q14406 222 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 LARS2Q15031 903 aaKnown RBP10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 SAXO2Q658L1 398 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 NT5DC4Q86YG4 428 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 TBC1D19Q8N5T2 526 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 C9orf43Q8TAL5 461 aaPredicted RBP10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 HASPINQ8TF76 798 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 CNPPD1Q9BV87 410 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 OSBPL2Q9H1P3 480 aa10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 GPN3Q9UHW5 284 aaPredicted RBP10.54□□□□□ -0.72
CLSTN3-207ENST00000537408 PQLC2LA1A4F0 135 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 M0R082 166 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 AGRPO00253 132 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 ABCD4O14678 606 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 SLC22A3O75751 556 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 SLC2A4P14672 509 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 BCAT1P54687 386 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 KIAA1614Q5VZ46 1190 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 SHQ1Q6PI26 577 aaKnown RBP10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 TRILQ7L0X0 811 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 PID1Q7Z2X4 250 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 SPATA6LQ8N4H0 392 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 DTWD1Q8N5C7 304 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 NLGN4YQ8NFZ3 816 aaPredicted RBP10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 OR2T12Q8NG77 320 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 MAFAQ8NHW3 353 aaPredicted RBP10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 FOXJ1Q92949 421 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 LPPQ93052 612 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 ASPNQ9BXN1 380 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 ZNF436Q9C0F3 470 aaPredicted RBP10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 EMC7Q9NPA0 242 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 SDR39U1Q9NRG7 319 aaPredicted RBP10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 MGAT4BQ9UQ53 548 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 INVSQ9Y283 1065 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 V9GYH0 126 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 TANC1Q9C0D5 1861 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 SCELO95171 688 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 PRAMEF1O95521 474 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 SLC2A2P11168 524 aaPredicted RBP10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 LHCGRP22888 699 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 LGALS3BPQ08380 585 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 FGL2Q14314 439 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 IRF3Q14653 427 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 SMN1Q16637 294 aaKnown RBP10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 DDI2Q5TDH0 399 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 USP45Q70EL2 814 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 NLRP8Q86W28 1048 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 KIAA1143Q96AT1 154 aaPredicted RBP10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 WDFY2Q96P53 400 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 RNF167Q9H6Y7 350 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 ARHGAP28Q9P2N2 729 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 NDRG3Q9UGV2 375 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 ACAD8Q9UKU7 415 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 PKP3Q9Y446 797 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 A0A0U1RQF3 1178 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 FAM170BA6NMN3 283 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 MITFO75030 526 aaPredicted RBP10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 WBP4O75554 376 aaKnown RBP10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 IFNA4P05014 189 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 F7P08709 466 aaPredicted RBP10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 OR56A5P0C7T3 313 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 ARF4P18085 180 aaPredicted RBP10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 CLCNKAP51800 687 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 POLR2JP52435 117 aaKnown RBP10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 PLK1P53350 603 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 AIF1P55008 147 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 SNAPC1Q16533 368 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 TUSC1Q2TAM9 212 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 CYP27C1Q4G0S4 372 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 SLC34A3Q8N130 599 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 TRIM43Q96BQ3 446 aaPredicted RBP10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 NXPE2Q96DL1 559 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 CYP2S1Q96SQ9 504 aa10.53□□□□□ -0.72
CLSTN3-207ENST00000537408 SPOCK3Q9BQ16 436 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms