RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 TEX9Q8N6V9 391 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 LINC01555Q8NAE3 123 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 OR4K1Q8NGD4 311 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 EXT2Q93063 718 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 ATP6V1E2Q96A05 226 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 PYCR2Q96C36 320 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 GRAMD1AQ96CP6 724 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 WDR34Q96EX3 536 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 APOLD1Q96LR9 279 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 C7orf26Q96N11 449 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 ZNF317Q96PQ6 595 aaPredicted RBP7.12□□□□□ -1.27
CD44-228ENST00000528455 SLC38A3Q99624 504 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 CCT7Q99832 543 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 TMEM79Q9BSE2 394 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 PITPNM3Q9BZ71 974 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 PITHD1Q9GZP4 211 aaPredicted RBP7.12□□□□□ -1.27
CD44-228ENST00000528455 EHD1Q9H4M9 534 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 NT5DC2Q9H857 520 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 NOL11Q9H8H0 719 aaKnown RBP7.12□□□□□ -1.27
CD44-228ENST00000528455 ZBTB26Q9HCK0 441 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 PFDN4Q9NQP4 134 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 CCDC177Q9NQR7 707 aaPredicted RBP7.12□□□□□ -1.27
CD44-228ENST00000528455 TMEM184CQ9NVA4 438 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 HRASLS2Q9NWW9 162 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 PSD3Q9NYI0 1048 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 EPHA6Q9UF33 1036 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 ICKQ9UPZ9 632 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 RAP2CQ9Y3L5 183 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 TRAF6Q9Y4K3 522 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 ANGPTL3Q9Y5C1 460 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 UNC13CQ8NB66 2214 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 HEATR5BQ9P2D3 2071 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 EPG5Q9HCE0 2579 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 SPAARA0A1B0GVQ0 90 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 OR6C74A6NCV1 312 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 LRRC14BA6NHZ5 514 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 C2orf74A8MZ97 194 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 TCP11X1B4DZS4 312 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 BTN3A3O00478 584 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 UBFD1O14562 309 aaKnown RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 OR7A17O14581 309 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 B4GAT1O43505 415 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 ITM2AO43736 263 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 SH3BP5O60239 455 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 SHOX2O60902 331 aaPredicted RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 UBXN7O94888 489 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 CCNDBP1O95273 360 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 ESRRBO95718 433 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 LDOC1O95751 146 aaPredicted RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 HSPA4LO95757 839 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 CHRM5P08912 532 aaPredicted RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 FAM87AP0C7U9 286 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 C1GALT1C1LP0DN25 315 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 EPORP19235 508 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 PRDX3P30048 256 aaKnown RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 CMPK1P30085 196 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 HNF4AP41235 474 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 RPL14P50914 215 aaKnown RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 CCNG1P51959 295 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 MAZP56270 477 aaKnown RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 OCRLQ01968 901 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 CDC16Q13042 620 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 COL9A2Q14055 689 aaPredicted RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 NAA25Q14CX7 972 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 PLCL1Q15111 1095 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 SF1Q15637 639 aaKnown RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 CLPPQ16740 277 aaPredicted RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 SLC5A12Q1EHB4 618 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 C10orf62Q5T681 223 aaPredicted RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 THEMIS2Q5TEJ8 643 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 CES4AQ5XG92 561 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 ICE2Q659A1 982 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 ATG9BQ674R7 924 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 ARMC6Q6NXE6 501 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 DUS1LQ6P1R4 473 aaKnown RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 WDR74Q6RFH5 385 aaPredicted RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 SUSD1Q6UWL2 747 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 ZCCHC23Q6ZST2 131 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 GOLGA7Q7Z5G4 137 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 C17orf64Q86WR6 236 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 CRLF3Q8IUI8 442 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 NAXDQ8IW45 347 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 SFTPA2Q8IWL1 248 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 CARFQ8N187 725 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 L3MBTL4Q8NA19 623 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 PPFIBP2Q8ND30 876 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 ABHD11Q8NFV4 315 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 PIWIL2Q8TC59 973 aaKnown RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 TRPC4APQ8TEL6 797 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 NAT6Q93015 286 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 MOCOSQ96EN8 888 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 MED8Q96G25 268 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 ZDHHC12Q96GR4 267 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 FAR2Q96K12 515 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 OR2A14Q96R47 310 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 OR4K3Q96R72 315 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 ZNF382Q96SR6 550 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 DPYSL5Q9BPU6 564 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 DPH2Q9BQC3 489 aaPredicted RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 SARGQ9BW04 601 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms