RNA–Protein interactions for RNA: ENST00000520234.1

HMGB1P41-201, Transcript of high mobility group box 1 pseudogene 41, humanhuman

BASIC

Gene HMGB1P41, Length 440 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P41-201ENST00000520234 IQCA1Q86XH1 822 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 VSTM4Q8IW00 320 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 APLFQ8IW19 511 aaPredicted RBP2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 CCDC83Q8IWF9 413 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 KLHDC8BQ8IXV7 354 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 NME8Q8N427 588 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 MAPKAPK5-AS1Q8N8E1 139 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 TMEM190Q8WZ59 177 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 SYN2Q92777 582 aaPredicted RBP2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 N4BP2L2Q92802 583 aaPredicted RBP2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 MOB3AQ96BX8 217 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 RMDN1Q96DB5 314 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 GIMAP5Q96F15 307 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 THOC1Q96FV9 657 aaKnown RBP2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 CNDP2Q96KP4 475 aaKnown RBP2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 RAD9AQ99638 391 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 TUBB2BQ9BVA1 445 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 NUP85Q9BW27 656 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 VCPKMTQ9H867 229 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 ERVMER34-1Q9H9K5 563 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 A4GALTQ9NPC4 353 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 SIX2Q9NPC8 291 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 SLC52A3Q9NQ40 469 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 FGF21Q9NSA1 209 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 NFKBIL1Q9UBC1 381 aaPredicted RBP2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 CPSF3Q9UKF6 684 aaKnown RBP2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 BLOC1S6Q9UL45 172 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 ODF2LQ9ULJ1 636 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 HPCAL4Q9UM19 191 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 KCNJ14Q9UNX9 436 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 PA2G4Q9UQ80 394 aaKnown RBP2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 PPP2R2CQ9Y2T4 447 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 MYO5AQ9Y4I1 1855 aaKnown RBP2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 NOTCH2Q04721 2471 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 CPDO75976 1380 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 ABCC12Q96J65 1359 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 CAMTA1Q9Y6Y1 1673 aa2.98□□□□□ -1.93
HMGB1P41-201ENST00000520234 GREB1LQ9C091 1923 aaPredicted RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 C1orf167Q5SNV9 1468 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 BCL9LQ86UU0 1499 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 SALL1Q9NSC2 1324 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 DCCP43146 1447 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 ANKRD61A6NGH8 418 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 SLCO1B7G3V0H7 640 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 TRIM77I1YAP6 450 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 MPHOSPH10O00566 681 aaKnown RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 RNF113AO15541 343 aaKnown RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 EDIL3O43854 480 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 SOCS5O75159 536 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 TADA2AO75478 443 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 NEBLO76041 1014 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 PLGP00747 810 aaPredicted RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 ZFYP08048 801 aaPredicted RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 CCDC175P0C221 793 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 HSPA8P11142 646 aaKnown RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 ZNF18P17022 549 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 ERCC2P18074 760 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 MNDAP41218 407 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 LHX1P48742 406 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 RAD23AP54725 363 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 MAZP56270 477 aaKnown RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 RBPJQ06330 500 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 TFCP2Q12800 502 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 GPR17Q13304 367 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 PPIGQ13427 754 aaKnown RBP eCLIP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 ITGA7Q13683 1181 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 TEAD2Q15562 447 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 ALX1Q15699 326 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 CA9Q16790 459 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 ODF4Q2M2E3 257 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 ITPRIPL2Q3MIP1 535 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 PDLIM3Q53GG5 364 aaPredicted RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 LACTB2Q53H82 288 aaPredicted RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 CYP4A22Q5TCH4 519 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 AP1ARQ63HQ0 302 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 KRT39Q6A163 491 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 SH2D5Q6ZV89 423 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 APTXQ7Z2E3 356 aaKnown RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 ZNF589Q86UQ0 364 aaPredicted RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 MFN1Q8IWA4 741 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 MARVELD2Q8N4S9 558 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 ZNF611Q8N823 705 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 NECAB1Q8N987 351 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 ZNF383Q8NA42 475 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 NOA1Q8NC60 698 aaKnown RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 AENQ8WTP8 325 aaKnown RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 PHLDA1Q8WV24 401 aaPredicted RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 ROBO4Q8WZ75 1007 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 SENP5Q96HI0 755 aaPredicted RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 LINC00615Q96LM1 132 aaPredicted RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 ZNF396Q96N95 335 aaPredicted RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 AGAP3Q96P47 875 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 FNBP1Q96RU3 617 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 FEVQ99581 238 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 FSD1Q9BTV5 496 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 SLC25A23Q9BV35 468 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 RBM4Q9BWF3 364 aaKnown RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 XPO4Q9C0E2 1151 aaKnown RBP2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 OR10A4Q9H209 315 aa2.97□□□□□ -1.93
HMGB1P41-201ENST00000520234 S1PR5Q9H228 398 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms