RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 CYP4V2Q6ZWL3 525 aaPredicted RBP11.33□□□□□ -0.6
SYNPO-204ENST00000519664 MRPL10Q7Z7H8 261 aaKnown RBP11.33□□□□□ -0.6
SYNPO-204ENST00000519664 C7orf61Q8IZ16 206 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 LMNTD1Q8N9Z9 388 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 ARRDC2Q8TBH0 407 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 FRS2Q8WU20 508 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 IRF7Q92985 503 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 DMRTB1Q96MA1 342 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 ZNF641Q96N77 438 aaPredicted RBP11.33□□□□□ -0.6
SYNPO-204ENST00000519664 RNF38Q9H0F5 515 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 CARS2Q9HA77 564 aaKnown RBP11.33□□□□□ -0.6
SYNPO-204ENST00000519664 SDR39U1Q9NRG7 319 aaPredicted RBP11.33□□□□□ -0.6
SYNPO-204ENST00000519664 ANXA8P13928 327 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 ALAS2P22557 587 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 KELP23276 732 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 ARCN1P48444 511 aaKnown RBP11.33□□□□□ -0.6
SYNPO-204ENST00000519664 PHC1P78364 1004 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 LASP1Q14847 261 aaKnown RBP11.33□□□□□ -0.6
SYNPO-204ENST00000519664 MINDY4Q4G0A6 757 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 IQCCQ4KMZ1 466 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 TMPRSS11AQ6ZMR5 421 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 DTWD1Q8N5C7 304 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 AQP11Q8NBQ7 271 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 CD200R1Q8TD46 325 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 ZIC5Q96T25 663 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 SLC29A3Q9BZD2 475 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 LINC00597Q9H2U6 94 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 EHD1Q9H4M9 534 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 POPDC3Q9HBV1 291 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 PCDHB3Q9Y5E6 796 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 TNRC6CQ9HCJ0 1690 aaKnown RBP11.33□□□□□ -0.6
SYNPO-204ENST00000519664 LRP5O75197 1615 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 TTC34A8MYJ7 566 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 CLPXO76031 633 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 FPR1P21462 350 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 GUCA1AP43080 201 aaPredicted RBP11.33□□□□□ -0.6
SYNPO-204ENST00000519664 RAB25P57735 213 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 DOC2AQ14183 400 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 C5orf22Q49AR2 442 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 C6orf141Q5SZD1 244 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 ZNF655Q8N720 491 aaPredicted RBP11.33□□□□□ -0.6
SYNPO-204ENST00000519664 POMGNT2Q8NAT1 580 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 OLIG1Q8TAK6 271 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 POP5Q969H6 163 aaKnown RBP11.33□□□□□ -0.6
SYNPO-204ENST00000519664 EGLN2Q96KS0 407 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 BIRC8Q96P09 236 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 RANBP9Q96S59 729 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 CSNK1G1Q9HCP0 422 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 VAPAQ9P0L0 249 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 IL17CQ9P0M4 197 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 SPIN1Q9Y657 262 aaPredicted RBP11.33□□□□□ -0.6
SYNPO-204ENST00000519664 USP3Q9Y6I4 520 aa11.33□□□□□ -0.6
SYNPO-204ENST00000519664 IQCMA0A1B0GVH7 501 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 UNCXA6NJT0 531 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 ADH5P11766 374 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 C4BPBP20851 252 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 ACRV1P26436 265 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 KDELR2P33947 212 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 PTGS2P35354 604 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 GPR68Q15743 365 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 RAB41Q5JT25 222 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 LSMEM2Q8N112 164 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 RNF175Q8N4F7 328 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 HERVK_113Q902F9 699 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 HERC2P3Q9BVR0 1158 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 MCUBQ9NWR8 336 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 DNAJC27Q9NZQ0 273 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 SEC16AO15027 2179 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 CARNS1A5YM72 827 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 PGRMC2O15173 223 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 ALDOCP09972 364 aaKnown RBP11.32□□□□□ -0.6
SYNPO-204ENST00000519664 CCL5P13501 91 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 MAGEA3P43357 314 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 RNF144AP50876 292 aaPredicted RBP11.32□□□□□ -0.6
SYNPO-204ENST00000519664 ATAT1Q5SQI0 421 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 TMEM236Q5W0B7 351 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 LARP4Q71RC2 724 aaKnown RBP eCLIP11.32□□□□□ -0.6
SYNPO-204ENST00000519664 POF1BQ8WVV4 589 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 WDR26Q9H7D7 661 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 SAGE2PA6NJ88 616 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 TLX2O43763 284 aaPredicted RBP11.32□□□□□ -0.6
SYNPO-204ENST00000519664 SEMA3DO95025 777 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 INMTO95050 263 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 RPLP0P05388 317 aaKnown RBP11.32□□□□□ -0.6
SYNPO-204ENST00000519664 TCEA1P23193 301 aaKnown RBP11.32□□□□□ -0.6
SYNPO-204ENST00000519664 ATP4BP51164 291 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 ERVK-21P61565 698 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 SLC9A5Q14940 896 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 ATP6AP1Q15904 470 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 TYSND1Q2T9J0 566 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 RBM48Q5RL73 367 aaKnown RBP11.32□□□□□ -0.6
SYNPO-204ENST00000519664 KCTD11Q693B1 232 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 MZT2BQ6NZ67 158 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 ZNF773Q6PK81 442 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 RETREG3Q86VR2 466 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 PEX13Q92968 403 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 C11orf24Q96F05 449 aaPredicted RBP11.32□□□□□ -0.6
SYNPO-204ENST00000519664 GAL3ST1Q99999 423 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 C17orf62Q9BQA9 187 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 TTLL2Q9BWV7 592 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms