RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ALBP02768 609 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 SBK3P0C264 359 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 PTPN4P29074 926 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 EEF1DP29692 281 aaKnown RBP13.59□□□□□ -0.23
NUP54-216ENST00000514901 HPDP32754 393 aaPredicted RBP13.59□□□□□ -0.23
NUP54-216ENST00000514901 ZNF844Q08AG5 666 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 GTF2H2Q13888 395 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 DOC2AQ14183 400 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 SLBPQ14493 270 aaKnown RBP eCLIP13.59□□□□□ -0.23
NUP54-216ENST00000514901 HKDC1Q2TB90 917 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 KRT71Q3SY84 523 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 CRTC2Q53ET0 693 aaPredicted RBP13.59□□□□□ -0.23
NUP54-216ENST00000514901 BEND6Q5SZJ8 279 aaPredicted RBP13.59□□□□□ -0.23
NUP54-216ENST00000514901 C1orf189Q5VU69 101 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 LIPJQ5W064 366 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 NIPAL1Q6NVV3 410 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 GTF2H2CQ6P1K8 395 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 C16orf46Q6P387 395 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 FAM199XQ6PEV8 388 aaPredicted RBP13.59□□□□□ -0.23
NUP54-216ENST00000514901 INO80CQ6PI98 192 aaPredicted RBP13.59□□□□□ -0.23
NUP54-216ENST00000514901 LRIG3Q6UXM1 1119 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 ZNF740Q8NDX6 193 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 NT5CQ8TCD5 201 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 SNRNP27Q8WVK2 155 aaKnown RBP13.59□□□□□ -0.23
NUP54-216ENST00000514901 C10orf90Q96M02 699 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 C1QTNF3Q9BXJ4 246 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 SYNPO2LQ9H987 977 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 AKIRIN1Q9H9L7 192 aaPredicted RBP13.59□□□□□ -0.23
NUP54-216ENST00000514901 MKS1Q9NXB0 559 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 IFT80Q9P2H3 777 aaPredicted RBP13.59□□□□□ -0.23
NUP54-216ENST00000514901 PADI2Q9Y2J8 665 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 ZFHX4Q86UP3 3567 aa13.58□□□□□ -0.23
NUP54-216ENST00000514901 CFAP47Q6ZTR5 3102 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 ANKDD1BA6NHY2 528 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 A8MT66 165 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 E2F3O00716 465 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 RGS16O15492 202 aaPredicted RBP13.58□□□□□ -0.24
NUP54-216ENST00000514901 P2RX6O15547 441 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 NDUFS4O43181 175 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 SIX3O95343 332 aaPredicted RBP13.58□□□□□ -0.24
NUP54-216ENST00000514901 SERPINA6P08185 405 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 EPORP19235 508 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 SERPINB1P30740 379 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 HNF4AP41235 474 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 AVPR1BP47901 424 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 NAA20P61599 178 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 HERVK_113P63132 956 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 SKP1P63208 163 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 NCF4Q15080 339 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 TMEM214Q6NUQ4 689 aaKnown RBP13.58□□□□□ -0.24
NUP54-216ENST00000514901 GOLGA7Q7Z5G4 137 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 ARHGEF39Q8N4T4 335 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 RDH11Q8TC12 318 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 FKBP10Q96AY3 582 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 MAGEB10Q96LZ2 347 aaPredicted RBP13.58□□□□□ -0.24
NUP54-216ENST00000514901 SMC6Q96SB8 1091 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 ERVK-6Q9BXR3 956 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 DRC3Q9H069 523 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 IQCGQ9H095 443 aaKnown RBP13.58□□□□□ -0.24
NUP54-216ENST00000514901 SPNS1Q9H2V7 528 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 RHBGQ9H310 441 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 IPPKQ9H8X2 491 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 ZNF304Q9HCX3 659 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 IL17BQ9UHF5 180 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 ADGRE2Q9UHX3 823 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 MID2Q9UJV3 735 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 SLC22A7Q9Y694 548 aa13.58□□□□□ -0.24
NUP54-216ENST00000514901 FOXO6A8MYZ6 492 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 H0YIG0 161 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 DLX3O60479 287 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 PRAMEF4O60810 478 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 CLEC3AO75596 197 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 PROCP04070 461 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 SERPIND1P05546 499 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 CAPN1P07384 714 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 MYL2P10916 166 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 IMPDH1P20839 514 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 F8A1P23610 371 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 CCNG1P51959 295 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 PRKAA2P54646 552 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 HERC3Q15034 1050 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 CEP85LQ5SZL2 805 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 PRAMEF9Q5VWM5 478 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 MLIPQ5VWP3 458 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 GRHL2Q6ISB3 625 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 LCN10Q6JVE6 187 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 MED27Q6P2C8 311 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 FAM198BQ6UWH4 519 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 ZYG11AQ6WRX3 759 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 ABHD13Q7L211 337 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 OVCH1Q7RTY7 1134 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 SYVN1Q86TM6 617 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 SRRM1Q8IYB3 904 aaKnown RBP13.57□□□□□ -0.24
NUP54-216ENST00000514901 C4orf33Q8N1A6 199 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 BANPQ8N9N5 519 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 ANKRD53Q8N9V6 530 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 CREB3L4Q8TEY5 395 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 PPP4R1Q8TF05 950 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 STARD8Q92502 1023 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 ATP6V1E2Q96A05 226 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms