RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 LRP8Q14114 963 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 SNAPC1Q16533 368 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 FAM122CQ6P4D5 195 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 VASH1Q7L8A9 365 aaPredicted RBP12.75□□□□□ -0.37
TCOF1-213ENST00000514442 CCDC36Q8IYA8 594 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 SHKBP1Q8TBC3 707 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 SEC14L3Q9UDX4 400 aa12.75□□□□□ -0.37
TCOF1-213ENST00000514442 TEX51A0A1B0GUA7 166 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 hCG_2039718K7EN88 272 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 GRID2O43424 1007 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 PIM1P11309 404 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-213ENST00000514442 PPP1R8Q12972 351 aaKnown RBP12.74□□□□□ -0.37
TCOF1-213ENST00000514442 IRAK1BP1Q5VVH5 260 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 DPY19L2P1Q6NXN4 242 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 CDC73Q6P1J9 531 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 OR5H6Q8NGV6 325 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 MOCOSQ96EN8 888 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 COL21A1Q96P44 957 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 WDR26Q9H7D7 661 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 SEMA3GQ9NS98 782 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 COQ3Q9NZJ6 369 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 G3V2L1 256 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 STATHP02808 62 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 CD247P20963 164 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 MARCH8Q5T0T0 291 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 GCNT6Q5T4J0 391 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 GPR153Q6NV75 609 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 PSD2Q9BQI7 771 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 FBRSL1Q9HCM7 1045 aaKnown RBP12.74□□□□□ -0.37
TCOF1-213ENST00000514442 TIGARQ9NQ88 270 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 ERVK13-1Q9NX77 482 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 IL37Q9NZH6 218 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 GTPBP1O00178 669 aaKnown RBP12.74□□□□□ -0.37
TCOF1-213ENST00000514442 TNFRSF11BO00300 401 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 DLGAP1O14490 977 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 CSF2P04141 144 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 TCF3P15923 654 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 NT5EP21589 574 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 DNAJA1P31689 397 aaKnown RBP12.74□□□□□ -0.37
TCOF1-213ENST00000514442 VIPR1P32241 457 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 STARP49675 285 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 STC1P52823 247 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 NPWQ8N729 165 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 SNAPC3Q92966 411 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 TRMT61BQ9BVS5 477 aaKnown RBP12.74□□□□□ -0.37
TCOF1-213ENST00000514442 UCK2Q9BZX2 261 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 CARS2Q9HA77 564 aaKnown RBP12.74□□□□□ -0.37
TCOF1-213ENST00000514442 AMBNQ9NP70 447 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 NUMBLQ9Y6R0 609 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 HMX3A6NHT5 357 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 HTR1EP28566 365 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 ERVK-8P63133 956 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 STX4Q12846 297 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 TSTQ16762 297 aaKnown RBP12.74□□□□□ -0.37
TCOF1-213ENST00000514442 CLLU1OSQ5K130 101 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 BRAT1Q6PJG6 821 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 TICAM1Q8IUC6 712 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 SLC13A3Q8WWT9 602 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 C1orf74Q96LT6 269 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 KCNA7Q96RP8 456 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 ZIM2Q9NZV7 527 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 SLC22A14Q9Y267 594 aa12.74□□□□□ -0.37
TCOF1-213ENST00000514442 UPK3BL1B0FP48 263 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 UPK3BL2E5RIL1 263 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 NPPAP01160 153 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 ATP1B2P14415 290 aaPredicted RBP12.73□□□□□ -0.37
TCOF1-213ENST00000514442 DDX6P26196 483 aaKnown RBP eCLIP12.73□□□□□ -0.37
TCOF1-213ENST00000514442 GGT5P36269 586 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 GMPRP36959 345 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 ACTR1BP42025 376 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 ACTR1AP61163 376 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 ENPP7Q6UWV6 458 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 LSM14AQ8ND56 463 aaKnown RBP12.73□□□□□ -0.37
TCOF1-213ENST00000514442 PXYLP1Q8TE99 480 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 SLC35B4Q969S0 331 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 SLC6A15Q9H2J7 730 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 SRMSQ9H3Y6 488 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 SMURF1Q9HCE7 757 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 B4GALT6Q9UBX8 382 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 GIMAP2Q9UG22 337 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 UBQLN2Q9UHD9 624 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 MRPS33Q9Y291 106 aaKnown RBP12.73□□□□□ -0.37
TCOF1-213ENST00000514442 UGT2A1Q9Y4X1 527 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 PCDHGA11Q9Y5H2 935 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 MBLAC1A4D2B0 266 aaPredicted RBP12.73□□□□□ -0.37
TCOF1-213ENST00000514442 OR1I1O60431 355 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 SEC14L2O76054 403 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 S100A6P06703 90 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 F8A1P23610 371 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 GHRHRQ02643 423 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 TPRG1Q6ZUI0 275 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 GPR135Q8IZ08 494 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 BADQ92934 168 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 CCDC120Q96HB5 630 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 MRGPRX2Q96LB1 330 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 A0A1B0GTW7 788 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 UBE2QL1A1L167 161 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 NME4O00746 187 aa12.73□□□□□ -0.37
TCOF1-213ENST00000514442 AFF1P51825 1210 aaKnown RBP12.73□□□□□ -0.37
TCOF1-213ENST00000514442 MAZP56270 477 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms