RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 SRSF6Q13247 344 aaKnown RBP4.42□□□□□ -1.7
NUP54-206ENST00000508465 PEX6Q13608 980 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 NFE2L1Q14494 772 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 CLCA4Q14CN2 919 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 C16orf72Q14CZ0 275 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 BRD3Q15059 726 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 TAF1AQ15573 450 aaPredicted RBP4.42□□□□□ -1.7
NUP54-206ENST00000508465 TGIF1Q15583 401 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 CCNG2Q16589 344 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 INSCQ1MX18 579 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 TBC1D25Q3MII6 688 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 MAP9Q49MG5 647 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 ZRANB3Q5FWF4 1079 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.42□□□□□ -1.7
NUP54-206ENST00000508465 SEL1L2Q5TEA6 688 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 KCTD11Q693B1 232 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 PPP4R4Q6NUP7 873 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 NAPRTQ6XQN6 538 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 PPP1R21Q6ZMI0 780 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 C11orf96Q7Z7L8 435 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 LRRTM4Q86VH4 590 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 AMZ2Q86W34 360 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 ZFAND4Q86XD8 727 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 PIANPQ8IYJ0 282 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 CFAP206Q8IYR0 622 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 SFRP1Q8N474 314 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 CLDN19Q8N6F1 224 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 DNAAF3Q8N9W5 541 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 Q8NA96 180 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 NLGN4YQ8NFZ3 816 aaPredicted RBP4.42□□□□□ -1.7
NUP54-206ENST00000508465 OR6C4Q8NGE1 309 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 TBC1D15Q8TC07 691 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 USP7Q93009 1102 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 HDAC10Q969S8 669 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 TMEM125Q96AQ2 219 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 AHCYL2Q96HN2 611 aaKnown RBP4.42□□□□□ -1.7
NUP54-206ENST00000508465 ADI1Q9BV57 179 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 STRADBQ9C0K7 418 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 ASB8Q9H765 288 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 RMI1Q9H9A7 625 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 ARNT2Q9HBZ2 717 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 ASCL3Q9NQ33 180 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 OCIAD1Q9NX40 245 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 HACD3Q9P035 362 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 DKK4Q9UBT3 224 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 SLC2A6Q9UGQ3 507 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 BOD1L1Q8NFC6 3051 aa4.42□□□□□ -1.7
NUP54-206ENST00000508465 LRP4O75096 1905 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 A0A087WV48 116 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 CCDC187A0A096LP49 1063 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 TCRBV7S3A2A0A539 114 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 CDHR4A6H8M9 788 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 USP27XA6NNY8 438 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 E7EVH7 732 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 RRP8O43159 456 aaKnown RBP4.41□□□□□ -1.7
NUP54-206ENST00000508465 PSMD3O43242 534 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 KIF1CO43896 1103 aaKnown RBP4.41□□□□□ -1.7
NUP54-206ENST00000508465 AVILO75366 819 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 ULK1O75385 1050 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 TCEA3O75764 348 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 CPNE6O95741 557 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 AP2A1O95782 977 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 VIPP01282 170 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 FGF3P11487 239 aaPredicted RBP4.41□□□□□ -1.7
NUP54-206ENST00000508465 F3P13726 295 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 AMD1P17707 334 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 FPR1P21462 350 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 IDSP22304 550 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 STIP1P31948 543 aaKnown RBP4.41□□□□□ -1.7
NUP54-206ENST00000508465 GNALP38405 381 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 LEPRP48357 1165 aaKnown RBP4.41□□□□□ -1.7
NUP54-206ENST00000508465 ARCN1P48444 511 aaKnown RBP4.41□□□□□ -1.7
NUP54-206ENST00000508465 ZNF140P52738 457 aaPredicted RBP4.41□□□□□ -1.7
NUP54-206ENST00000508465 LIMK2P53671 638 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 CSE1LP55060 971 aaKnown RBP4.41□□□□□ -1.7
NUP54-206ENST00000508465 SESN3P58005 492 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 UBE2IP63279 158 aaKnown RBP4.41□□□□□ -1.7
NUP54-206ENST00000508465 FHL1Q13642 323 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 GTF2H3Q13889 308 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 RPE65Q16518 533 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 LDLRAP1Q5SW96 308 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 PDPK2PQ6A1A2 396 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 DUS1LQ6P1R4 473 aaKnown RBP4.41□□□□□ -1.7
NUP54-206ENST00000508465 TTC27Q6P3X3 843 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 CES3Q6UWW8 571 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 TMEM26Q6ZUK4 368 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 STRA8Q7Z7C7 330 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 LDB1Q86U70 411 aaPredicted RBP4.41□□□□□ -1.7
NUP54-206ENST00000508465 SLC9B2Q86UD5 537 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 SERPINA9Q86WD7 417 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 KLHDC8BQ8IXV7 354 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 SLC35F6Q8N357 371 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 PRELID2Q8N945 189 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 CCDC89Q8N998 374 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 TRIM58Q8NG06 486 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 WDR36Q8NI36 951 aaKnown RBP4.41□□□□□ -1.7
NUP54-206ENST00000508465 DENND1AQ8TEH3 1009 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 COG1Q8WTW3 980 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 MAGOHBQ96A72 148 aaKnown RBP4.41□□□□□ -1.7
NUP54-206ENST00000508465 CXorf40BQ96DE9 158 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms