RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 IL11P20809 199 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 CPT2P23786 658 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 ELAVL4P26378 380 aaKnown RBP4.66□□□□□ -1.66
SF3B1-212ENST00000496458 ALDH1B1P30837 517 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 KRT2P35908 639 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 ZNF131P52739 623 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 IRX4P78413 519 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 RBPJQ06330 500 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 PAX8Q06710 450 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 SGCGQ13326 291 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 CTR9Q6PD62 1173 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 SUSD1Q6UWL2 747 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 CHMP1BQ7LBR1 199 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 GALNTL5Q7Z4T8 443 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 TLK2Q86UE8 772 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 IQCA1Q86XH1 822 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 MAML2Q8IZL2 1156 aaPredicted RBP4.66□□□□□ -1.66
SF3B1-212ENST00000496458 METTL4Q8N3J2 472 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 ANKRD13CQ8N6S4 541 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 XXYLT1Q8NBI6 393 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 HDAC11Q96DB2 347 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 CNRIP1Q96F85 164 aaPredicted RBP4.66□□□□□ -1.66
SF3B1-212ENST00000496458 ATXN7L3BQ96GX2 97 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 WIPI2Q9Y4P8 454 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 CLASP1Q7Z460 1538 aa4.66□□□□□ -1.66
SF3B1-212ENST00000496458 RAPGEF2Q9Y4G8 1499 aa4.65□□□□□ -1.66
SF3B1-212ENST00000496458 TRAV24A0A0B4J272 114 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 ASB14A6NK59 587 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 DIAPH2O60879 1101 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 MYBL1P10243 752 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 PDHA2P29803 388 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 CSRP3P50461 194 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 RAB28P51157 221 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 LIMK1P53667 647 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 UBASH3AP57075 661 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 CALD1Q05682 793 aaKnown RBP4.65□□□□□ -1.67
SF3B1-212ENST00000496458 COX10Q12887 443 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 PRPF4BQ13523 1007 aaKnown RBP4.65□□□□□ -1.67
SF3B1-212ENST00000496458 OPCMLQ14982 345 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 CCDC158Q5M9N0 1113 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 ZNF774Q6NX45 483 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 RBPMS2Q6ZRY4 209 aaKnown RBP4.65□□□□□ -1.67
SF3B1-212ENST00000496458 SLC24A5Q71RS6 500 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 ZER1Q7Z7L7 766 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 CDC20BQ86Y33 519 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 CARNMT1Q8N4J0 409 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 FAM89BQ8N5H3 189 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 KCTD6Q8NC69 237 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 OR5T2Q8NGG2 359 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 OR2L2Q8NH16 312 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 TSACCQ96A04 125 aaPredicted RBP4.65□□□□□ -1.67
SF3B1-212ENST00000496458 RAB11FIP5Q9BXF6 653 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 TRIM6Q9C030 488 aaPredicted RBP4.65□□□□□ -1.67
SF3B1-212ENST00000496458 WDR35Q9P2L0 1181 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 PRDM4Q9UKN5 801 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.65□□□□□ -1.67
SF3B1-212ENST00000496458 SELENOKQ9Y6D0 94 aa4.65□□□□□ -1.67
SF3B1-212ENST00000496458 LOC105371242A0A075B767 164 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 THEGLP0DJG4 465 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 ACHEP22303 614 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 TNNT3P45378 269 aaPredicted RBP4.64□□□□□ -1.67
SF3B1-212ENST00000496458 NOVP48745 357 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 AIMP1Q12904 312 aaKnown RBP4.64□□□□□ -1.67
SF3B1-212ENST00000496458 FAM189A2Q15884 450 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 LCA5Q86VQ0 697 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 ERC1Q8IUD2 1116 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 LRTM2Q8N967 370 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 TDRD5Q8NAT2 981 aaKnown RBP4.64□□□□□ -1.67
SF3B1-212ENST00000496458 C9orf43Q8TAL5 461 aaPredicted RBP4.64□□□□□ -1.67
SF3B1-212ENST00000496458 LRRC15Q8TF66 581 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 RASL10AQ92737 203 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 SPSB1Q96BD6 273 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 PGAP3Q96FM1 320 aaPredicted RBP4.64□□□□□ -1.67
SF3B1-212ENST00000496458 SLC45A3Q96JT2 553 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 FOXN4Q96NZ1 517 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 KLHL5Q96PQ7 755 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 GAL3ST4Q96RP7 486 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 OVOL2Q9BRP0 275 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 DESI2Q9BSY9 194 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 CCDC177Q9NQR7 707 aaPredicted RBP4.64□□□□□ -1.67
SF3B1-212ENST00000496458 SLC7A10Q9NS82 523 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 MTRRQ9UBK8 725 aa4.64□□□□□ -1.67
SF3B1-212ENST00000496458 PRG4Q92954 1404 aaPredicted RBP4.63□□□□□ -1.67
SF3B1-212ENST00000496458 KIAA0586Q9BVV6 1533 aa4.63□□□□□ -1.67
SF3B1-212ENST00000496458 ERCC6L2Q5T890 1561 aa4.63□□□□□ -1.67
SF3B1-212ENST00000496458 CEACAM4O75871 244 aa4.63□□□□□ -1.67
SF3B1-212ENST00000496458 IGHV3-13P01766 116 aa4.63□□□□□ -1.67
SF3B1-212ENST00000496458 KIF5BP33176 963 aa4.63□□□□□ -1.67
SF3B1-212ENST00000496458 CETN2P41208 172 aa4.63□□□□□ -1.67
SF3B1-212ENST00000496458 DCDC1P59894 354 aa4.63□□□□□ -1.67
SF3B1-212ENST00000496458 ILF2Q12905 390 aaKnown RBP4.63□□□□□ -1.67
SF3B1-212ENST00000496458 TRA2AQ13595 282 aaKnown RBP eCLIP4.63□□□□□ -1.67
SF3B1-212ENST00000496458 RASA2Q15283 850 aa4.63□□□□□ -1.67
SF3B1-212ENST00000496458 GDPGP1Q6ZNW5 385 aa4.63□□□□□ -1.67
SF3B1-212ENST00000496458 MFN1Q8IWA4 741 aa4.63□□□□□ -1.67
SF3B1-212ENST00000496458 CNDP2Q96KP4 475 aaKnown RBP4.63□□□□□ -1.67
SF3B1-212ENST00000496458 JAKMIP1Q96N16 626 aaKnown RBP4.63□□□□□ -1.67
SF3B1-212ENST00000496458 ZNF558Q96NG5 402 aa4.63□□□□□ -1.67
SF3B1-212ENST00000496458 LRRC3BQ96PB8 259 aa4.63□□□□□ -1.67
SF3B1-212ENST00000496458 LGMNQ99538 433 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms