RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	UCHL3	P15374	230 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	CHRNB2	P17787	502 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	USP8	P40818	1118 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	PTPN9	P43378	593 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	THOP1	P52888	689 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	KIAA1024L	P59773	190 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	KRTAP10-9	P60411	292 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	RPL7A	P62424	266 aa	Known RBP	4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	YPEL5	P62699	121 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	RAE1	P78406	368 aa	Known RBP	4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	B4GALNT1	Q00973	533 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	ZFP36L1	Q07352	338 aa	Known RBP	4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	CCDC15	Q0P6D6	951 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	EIF3I	Q13347	325 aa	Known RBP	4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	NR1D2	Q14995	579 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	C16orf72	Q14CZ0	275 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	CCDC14	Q49A88	953 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	ZNF385B	Q569K4	471 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	RUNDC3A	Q59EK9	446 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	MANEA	Q5SRI9	462 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	ATP1A1-AS1	Q5TC04	95 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	TAF3	Q5VWG9	929 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	WDR93	Q6P2C0	686 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	LEKR1	Q6ZMV7	388 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	MON1B	Q7L1V2	547 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	C17orf82	Q86X59	251 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	P3H2	Q8IVL5	708 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	MCEMP1	Q8IX19	187 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	ULK2	Q8IYT8	1036 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	LGI4	Q8N135	537 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	ARL14	Q8N4G2	192 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	ZNF808	Q8N4W9	903 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	NPW	Q8N729	165 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	KCTD6	Q8NC69	237 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	TMEM35B	Q8NCS4	154 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	TNIP2	Q8NFZ5	429 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	GPR150	Q8NGU9	434 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	GPT2	Q8TD30	523 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	C2CD4C	Q8TF44	421 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	RAB40A	Q8WXH6	277 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	OR1E3	Q8WZA6	343 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	NTAN1	Q96AB6	310 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	ECHDC3	Q96DC8	303 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	TBC1D31	Q96DN5	1066 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	ARHGEF26	Q96DR7	871 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	RNF31	Q96EP0	1072 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	HMCES	Q96FZ2	354 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	FAM81B	Q96LP2	452 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	NSMCE3	Q96MG7	304 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	WDFY2	Q96P53	400 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	IL12RB2	Q99665	862 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	WRAP53	Q9BUR4	548 aa	Known RBP	4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	HDHD5	Q9BXW7	423 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	ALOXE3	Q9BYJ1	711 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	EDEM3	Q9BZQ6	932 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	ABCG4	Q9H172	646 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	OR10A4	Q9H209	315 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	LRRC19	Q9H756	370 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	SYNDIG1	Q9H7V2	258 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	EPB41L5	Q9HCM4	733 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	ALKBH4	Q9NXW9	302 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	PISD	Q9UG56	409 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	LIMA1	Q9UHB6	759 aa	Known RBP	4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	HOOK1	Q9UJC3	728 aa	Known RBP	4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	DNAJC12	Q9UKB3	198 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	APPL1	Q9UKG1	709 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	TMEM5	Q9Y2B1	443 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	MFHAS1	Q9Y4C4	1052 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	LOXL2	Q9Y4K0	774 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	OR1A2	Q9Y585	309 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	CAPN7	Q9Y6W3	813 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	PKDREJ	Q9NTG1	2253 aa		4.16	□□□□□ -1.74
VPS52-222	ENST00000495981	MN1	Q10571	1320 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS52-222	ENST00000495981		A0A1W2PQ09	198 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	PABPN1L	A6NDY0	278 aa	Known RBP	4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	TMEM202	A6NGA9	273 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	C3orf70	A6NLC5	250 aa	Predicted RBP	4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	CAPN14	A8MX76	684 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	GOLGA6L6	A8MZA4	724 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981		B4DGG1	531 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	TP73	O15350	636 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	NVL	O15381	856 aa	Known RBP	4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	KDELR3	O43731	214 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	NCR1	O76036	304 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	SEC14L2	O76054	403 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	TM7SF2	O76062	418 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	DDAH2	O95865	285 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	IGSF6	O95976	241 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	SOD1	P00441	154 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	PCCB	P05166	539 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	ALPI	P09923	528 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	LIF	P15018	202 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	CREB1	P16220	341 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	LHCGR	P22888	699 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	NFKBIA	P25963	317 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	CXCR5	P32302	372 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	ADRA1B	P35368	520 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	DEK	P35659	375 aa	Known RBP	4.15	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms