RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ELOVL2Q9NXB9 296 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 INTS6Q9UL03 887 aaKnown RBP10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PTPRFP10586 1907 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LOC285095A0A1B0GVY8 99 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SOBPA7XYQ1 873 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 HEPACAM2A8MVW5 462 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SULT1C4O75897 302 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 EPOP01588 193 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 BMP2P12643 396 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PTGER1P34995 402 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ATP6V1E1P36543 226 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 GNPDA1P46926 289 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 NCS1P62166 190 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SPCS2Q15005 226 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PCBP2Q15366 365 aaKnown RBP eCLIP10.41□□□□□ -0.742e-9■■■□□ 16.3
MSH5-SAPCD1-207ENST00000493662 HIST2H2ACQ16777 129 aaPredicted RBP10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PRAMEF14Q5SWL7 426 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 C9orf50Q5SZB4 431 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 HIST2H2AA3Q6FI13 130 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 HDDC3Q8N4P3 179 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LGALS12Q96DT0 336 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 OTUB1Q96FW1 271 aaPredicted RBP10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 HHIPL1Q96JK4 782 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 XKR8Q9H6D3 395 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PAK1IP1Q9NWT1 392 aaPredicted RBP10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SLAMF8Q9P0V8 285 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ACTR3BQ9P1U1 418 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 OR1A2Q9Y585 309 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 NPHS1O60500 1241 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 INMTO95050 263 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 IL32P24001 234 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 IGFBP5P24593 272 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 UQCRC1P31930 480 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 METAP1P53582 386 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ARSFP54793 590 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ABRAXAS2Q15018 415 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ZNF181Q2M3W8 571 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CYP27C1Q4G0S4 372 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TFB2MQ9H5Q4 396 aaKnown RBP10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 AMBNQ9NP70 447 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PAK6Q9NQU5 681 aaPredicted RBP10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ARMC1Q9NVT9 282 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MKS1Q9NXB0 559 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 IL36AQ9UHA7 158 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ADGRE2Q9UHX3 823 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CACNA1IQ9P0X4 2223 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 AHCTF1Q8WYP5 2266 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PARP14Q460N5 1801 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CACNA1EQ15878 2313 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 A0A1W2PP55 124 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 KPNA5O15131 536 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PSIP1O75475 530 aaKnown RBP10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TPPPO94811 219 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 IDUAP35475 653 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RAB25P57735 213 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 NFKB2Q00653 900 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SPANXN4Q5MJ08 99 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 GARNL3Q5VVW2 1013 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LETMD1Q6P1Q0 360 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DHRS4L2Q6PKH6 230 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RASSF6Q6ZTQ3 369 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SH2D5Q6ZV89 423 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LSMEM2Q8N112 164 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 OR5AK3PQ8NH89 298 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CCDC120Q96HB5 630 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 FERD3LQ96RJ6 166 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TRMOQ9BU70 441 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MMP27Q9H306 513 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ABCB9Q9NP78 766 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CTPS2Q9NRF8 586 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 INTS7Q9NVH2 962 aaKnown RBP10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DPP7Q9UHL4 492 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PCDHB1Q9Y5F3 818 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 KCNE2Q9Y6J6 123 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ISM1B1AKI9 464 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 UBFD1O14562 309 aaKnown RBP10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RFXANKO14593 260 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 WNT9AO14904 365 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RASAL1O95294 804 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CLDN9O95484 217 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ALPPL2P10696 532 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 HOXB8P17481 243 aaPredicted RBP10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CD40LGP29965 261 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ANGPT1Q15389 498 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 BTBD16Q32M84 506 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 FAM214AQ32MH5 1076 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 INO80DQ53TQ3 878 aaPredicted RBP10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 GRAMD2AQ8IUY3 354 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CMTR2Q8IYT2 770 aaKnown RBP10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CD200R1Q8TD46 325 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ASB12Q8WXK4 309 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SNAPC3Q92966 411 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RANBP9Q96S59 729 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 NKX2-4Q9H2Z4 354 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 OR51B5Q9H339 312 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MRPL39Q9NYK5 338 aaKnown RBP10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 IKZF3Q9UKT9 509 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 USP22Q9UPT9 525 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ERVW-1Q9UQF0 538 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CNOT1A5YKK6 2376 aaKnown RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms