RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 TRIM31Q9BZY9 425 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 CCDC68Q9H2F9 335 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 CDC42EP4Q9H3Q1 356 aaKnown RBP12.57□□□□□ -0.4
HDAC3-213ENST00000492506 PARVBQ9HBI1 364 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 SPHK1Q9NYA1 384 aa12.57□□□□□ -0.4
HDAC3-213ENST00000492506 FAF1Q9UNN5 650 aaPredicted RBP12.57□□□□□ -0.4
HDAC3-213ENST00000492506 GOLGA8TH3BQL2 631 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 KLHL18O94889 574 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 ATP1B2P14415 290 aaPredicted RBP12.56□□□□□ -0.4
HDAC3-213ENST00000492506 PPARGP37231 505 aaPredicted RBP12.56□□□□□ -0.4
HDAC3-213ENST00000492506 RPL21P46778 160 aaKnown RBP12.56□□□□□ -0.4
HDAC3-213ENST00000492506 KCNK10P57789 538 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 MESDQ14696 234 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 TAF1AQ15573 450 aaPredicted RBP12.56□□□□□ -0.4
HDAC3-213ENST00000492506 TAZQ16635 292 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 FCRL6Q6DN72 434 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 FAM180AQ6UWF9 173 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 DNAJC14Q6Y2X3 702 aaPredicted RBP12.56□□□□□ -0.4
HDAC3-213ENST00000492506 PDSS2Q86YH6 399 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 ERI1Q8IV48 349 aaKnown RBP12.56□□□□□ -0.4
HDAC3-213ENST00000492506 NXPE1Q8N323 547 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 BCORP1Q8N888 145 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 TFB1MQ8WVM0 346 aaKnown RBP12.56□□□□□ -0.4
HDAC3-213ENST00000492506 TFGQ92734 400 aaPredicted RBP12.56□□□□□ -0.4
HDAC3-213ENST00000492506 FKBP10Q96AY3 582 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 ALKBH8Q96BT7 664 aaKnown RBP12.56□□□□□ -0.4
HDAC3-213ENST00000492506 EFHD2Q96C19 240 aaPredicted RBP12.56□□□□□ -0.4
HDAC3-213ENST00000492506 CNDP1Q96KN2 507 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 TAAR6Q96RI8 345 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 HAUS8Q9BT25 410 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 TRIM8Q9BZR9 551 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 LHPPQ9H008 270 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 FAM96AQ9H5X1 160 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 WDR54Q9H977 334 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 OLAHQ9NV23 265 aa12.56□□□□□ -0.4
HDAC3-213ENST00000492506 NIPBLQ6KC79 2804 aaeCLIP12.55□□□□□ -0.4
HDAC3-213ENST00000492506 IGLV3-16A0A075B6K0 115 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 H3BNX3 289 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 IFRD1O00458 451 aaPredicted RBP12.55□□□□□ -0.4
HDAC3-213ENST00000492506 ESRRBO95718 433 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 CHRM5P08912 532 aaPredicted RBP12.55□□□□□ -0.4
HDAC3-213ENST00000492506 ZCCHC18P0CG32 403 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 ESRRAP11474 423 aaPredicted RBP12.55□□□□□ -0.4
HDAC3-213ENST00000492506 PGM1P36871 562 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 CCNFP41002 786 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 CETN2P41208 172 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 NR2C2P49116 596 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 ACTR3P61158 418 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 PLOD1Q02809 727 aaPredicted RBP12.55□□□□□ -0.4
HDAC3-213ENST00000492506 TESK1Q15569 626 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 NKG7Q16617 165 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 ZNF630Q2M218 657 aaPredicted RBP12.55□□□□□ -0.4
HDAC3-213ENST00000492506 KRTAP21-3Q3LHN1 58 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 MFSD7Q6UXD7 560 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 ISLR2Q6UXK2 745 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 BNC2Q6ZN30 1099 aaPredicted RBP12.55□□□□□ -0.4
HDAC3-213ENST00000492506 COX15Q7KZN9 410 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 OVCH1Q7RTY7 1134 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 PID1Q7Z2X4 250 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 LRRC6Q86X45 466 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 ZNF295-AS1Q8N0V1 137 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 MARVELD2Q8N4S9 558 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 OR5AR1Q8NGP9 310 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 DCUN1D1Q96GG9 259 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 CCDC120Q96HB5 630 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 LRGUKQ96M69 825 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 COPS8Q99627 209 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 MESP1Q9BRJ9 268 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 NDC1Q9BTX1 674 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 KLHL4Q9C0H6 718 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 SLC26A1Q9H2B4 701 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 ZNF696Q9H7X3 374 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 TBC1D23Q9NUY8 699 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 KLHL8Q9P2G9 620 aaPredicted RBP12.55□□□□□ -0.4
HDAC3-213ENST00000492506 FETUBQ9UGM5 382 aa12.55□□□□□ -0.4
HDAC3-213ENST00000492506 ZNF469Q96JG9 3925 aaPredicted RBP12.55□□□□□ -0.4
HDAC3-213ENST00000492506 A0A0J9YY10 115 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 C2orf81A6NN90 581 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 TNFAIP8O95379 198 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 CLPTM1O96005 669 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 ALBP02768 609 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 KRT1P04264 644 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 SNRPB2P08579 225 aaKnown RBP12.54□□□□□ -0.4
HDAC3-213ENST00000492506 RALBP11234 206 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 HTR1EP28566 365 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 PEBP1P30086 187 aaKnown RBP12.54□□□□□ -0.4
HDAC3-213ENST00000492506 FOXN2P32314 431 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 SHMT2P34897 504 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 ADRA1AP35348 466 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 COILP38432 576 aaPredicted RBP12.54□□□□□ -0.4
HDAC3-213ENST00000492506 CDKN2BP42772 138 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 SLCO1A2P46721 670 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 CDKN1CP49918 316 aaPredicted RBP12.54□□□□□ -0.4
HDAC3-213ENST00000492506 EMP3P54852 163 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 ARPC4P59998 168 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 RPA4Q13156 261 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 MFAP5Q13361 173 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 OLIG2Q13516 323 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 SLC5A12Q1EHB4 618 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 LRRC38Q5VT99 294 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms